LXL04_030570 | RubberDandelionOmics

Gene overview

LXL04_030570

Reference: OH-1004 Chr: Chr06 Coordinates: 118782460-118784403 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1188 bp · LXL04_030570|LXL04_030570|OH1004|cDNA

ACACTTCGGCCTAGATTCTCCTTCATCAAAAAGTCCAAACACAAATCTTCCTCTACTTATACCCTTCTTCTCCCTCTTCAATTCTTCACACAAACAACCCCTCTTCGATCTCATCTTCCAATGGCTTCCTCTGTAACCCCCACCCCCCTGTTGAAAGATGAACTCGACATCGTTATACCCACAATCAGAAACCTCGATTTCCTCGAGATGTGGAGGCCATTCTTCCAACCCTACCATTTGATCATCGTACAAGATGGCGA...

CDS

Download CDS FASTA

1068 bp · LXL04_030570|LXL04_030570|OH1004|CDS

ATGGCTTCCTCTGTAACCCCCACCCCCCTGTTGAAAGATGAACTCGACATCGTTATACCCACAATCAGAAACCTCGATTTCCTCGAGATGTGGAGGCCATTCTTCCAACCCTACCATTTGATCATCGTACAAGATGGCGATCCTTCAAAAGTCATCAATGTACCTGAAGGTTTCGATTACGAGCTCTACAATCGTAATGATATCAACAGAATTCTCGGACCTAAAGCTTCTTGCATATCCTTCAAGGATTCTGCTTGCCG...

Protein

Download Protein FASTA

355 aa · LXL04_030570|LXL04_030570|OH1004|PROTEIN

MASSVTPTPLLKDELDIVIPTIRNLDFLEMWRPFFQPYHLIIVQDGDPSKVINVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYIFTIDDDCFVAKDPSGNDINALEQHIKNLLSPSTPFFFNTLYDPYREGADFVRGYPFSLREGVSTAVSHGLWLNIPDYDAPTQLVKPRERNTRFVDAVMTIPKGTLFPMCGMNLAFDRELIGPAMYFGLMGDGQPIGRYDDMWAGWCIKVICDHLGLGVKTG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_030570`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_030570

Location Chr06:118782460-118784403 (-)

Description Similar to UPTG2: Probable UDP-arabinopyranose mutase 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

No hit for this species in the current source table.

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0599800`	UDP-L-arabinose mutase involved in the biosynthesis of cell wall non-cellulosic polysaccharides.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_030570 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009101 glycoprotein biosynthetic process Biological Process

GO:0030244 cellulose biosynthetic process Biological Process

GO:0033356 UDP-L-arabinose metabolic process Biological Process

GO:0071555 cell wall organization Biological Process

GO:0071669 plant-type cell wall organization or biogenesis Biological Process

GO:0005794 Golgi apparatus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0016866 intramolecular transferase activity Molecular Function

GO:0052691 UDP-arabinopyranose mutase activity Molecular Function

KEGG gene cross-reference

dosa:Os03g0599800

zma:542592

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.473

Rank 1 · LXL04_030570 · OH-1004

Golgi apparatus0.283

Rank 2 · LXL04_030570 · OH-1004

Nucleus0.206

Rank 3 · LXL04_030570 · OH-1004

Endoplasmic reticulum0.184

Rank 4 · LXL04_030570 · OH-1004

Cell membrane0.123

Rank 5 · LXL04_030570 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03214.20RGP11-345 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_030570	`PF03214.20`	RGP	11	345	1.2e-178	594.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8H8T0`	Oryza sativa subsp. japonica	UDP-arabinopyranose mutase 1	88.418%	Swiss-Prot	strong database homology

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