LXL04_030548 | RubberDandelionOmics

Gene overview

LXL04_030548

Reference: OH-1004 Chr: Chr06 Coordinates: 118380081-118382168 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1557 bp · LXL04_030548|LXL04_030548|OH1004|cDNA

ATGGCATTAGCACCTCCCGCCACCTCACTTTCAAAATCCTTTTTCTCTTCCAATCCCTCAACATCCCCATCATCAGCTCCTCCGCTTGTTAACCTACCGACCACCTCCCGTAAATCTTCTAGACAGTTCGTTGTACGGAACTCCGTTACGACTGCTCAGTCACCTTCCATTTCGTCGACTAGATCATCCACTGTGAAATCAGTGAAGGCGAGGCAGATCATTGACAGCAGGGGAAATCCGACGGTGGAGGTTGATCTCGT...

CDS

Download CDS FASTA

1557 bp · LXL04_030548|LXL04_030548|OH1004|CDS

ATGGCATTAGCACCTCCCGCCACCTCACTTTCAAAATCCTTTTTCTCTTCCAATCCCTCAACATCCCCATCATCAGCTCCTCCGCTTGTTAACCTACCGACCACCTCCCGTAAATCTTCTAGACAGTTCGTTGTACGGAACTCCGTTACGACTGCTCAGTCACCTTCCATTTCGTCGACTAGATCATCCACTGTGAAATCAGTGAAGGCGAGGCAGATCATTGACAGCAGGGGAAATCCGACGGTGGAGGTTGATCTCGT...

Protein

Download Protein FASTA

518 aa · LXL04_030548|LXL04_030548|OH1004|PROTEIN

MALAPPATSLSKSFFSSNPSTSPSSAPPLVNLPTTSRKSSRQFVVRNSVTTAQSPSISSTRSSTVKSVKARQIIDSRGNPTVEVDLVTDELYRSAVPSGASTGIYEALELRDGDKKVYGGKGVLNAVRNINEILGPKLIGVDVRNQADFDAIMLEIDGTPNKSKLGANAILGVSLSVCRAGAGAKGIPLYKHIQDISGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEALQMGSEVYHTLKGIIKAKYG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_030548`
TK1151 ID	TkA07G410560
OH-1004 ID	LXL04_030548
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	94.600
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_030548

Location Chr06:118380081-118382168 (+)

Description Similar to ENO1: Enolase 1, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g74030`	Enolase 1, chloroplastic.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_030548 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006094 gluconeogenesis Biological Process

GO:0006096 glycolytic process Biological Process

GO:0007618 mating Biological Process

GO:0010090 trichome morphogenesis Biological Process

GO:0042593 glucose homeostasis Biological Process

GO:0061621 canonical glycolysis Biological Process

GO:0000015 phosphopyruvate hydratase complex Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009570 chloroplast stroma Cellular Component

KEGG gene cross-reference

ath:AT1G74030

ddi:DDB_G0283137

dme:Dmel_CG17654

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.954

Rank 1 · LXL04_030548 · OH-1004

Cytoplasm0.054

Rank 2 · LXL04_030548 · OH-1004

Mitochondrion0.051

Rank 3 · LXL04_030548 · OH-1004

Peroxisome0.041

Rank 4 · LXL04_030548 · OH-1004

Nucleus0.018

Rank 5 · LXL04_030548 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03952.22Enolase_N65-193 aa

PF00113.29Enolase_C202-300 aa

PF00113.29Enolase_C320-516 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_030548	`PF03952.22`	Enolase_N	65	193	1.4e-55	187.7
LXL04_030548	`PF00113.29`	Enolase_C	202	300	2.1e-139	464.6
LXL04_030548	`PF00113.29`	Enolase_C	320	516	2.1e-139	464.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9C9C4`	Arabidopsis thaliana	Enolase 1, chloroplastic	78.185%	Swiss-Prot	strong database homology

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