LXL04_030493 | RubberDandelionOmics

Gene overview

LXL04_030493

Reference: OH-1004 Chr: Chr06 Coordinates: 117090010-117091769 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1019 bp · LXL04_030493|LXL04_030493|OH1004|cDNA

AATTTGATCATATACACTCAAATGATTTACTTTCACGTGATATAGATTGTTACGACAGGGAAATGAGTACTCTGCAAGGTCCAGTTGTTTGCCCTTCTGTCCGTGGAAAGCAAAGTGGTGTGCCTACTGTTGATGGACCTTTAATGAAGGCAAAAATTCACAGAAATGGAATCCAAGGATTTAAAGGCATCAACAGCCGTAGAGTTCAAGTGCGCAATAAACCAGGCTCAAAGACTGTGACATGTAGCTTCAGTTCTTCT...

CDS

Download CDS FASTA

957 bp · LXL04_030493|LXL04_030493|OH1004|CDS

ATGAGTACTCTGCAAGGTCCAGTTGTTTGCCCTTCTGTCCGTGGAAAGCAAAGTGGTGTGCCTACTGTTGATGGACCTTTAATGAAGGCAAAAATTCACAGAAATGGAATCCAAGGATTTAAAGGCATCAACAGCCGTAGAGTTCAAGTGCGCAATAAACCAGGCTCAAAGACTGTGACATGTAGCTTCAGTTCTTCTTCAAACGGTAATGGTAGCATGGCGGAGAGTTTTAATGAAAATGATTCAGATTATGTCAACTC...

Protein

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318 aa · LXL04_030493|LXL04_030493|OH1004|PROTEIN

MSTLQGPVVCPSVRGKQSGVPTVDGPLMKAKIHRNGIQGFKGINSRRVQVRNKPGSKTVTCSFSSSSNGNGSMAESFNENDSDYVNSSVVEAVEVKSGPDGFVIKMRDGKHLRCAHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIPRPTMYNVVKEMIDKMGYKVKLVRVTKRIHEAYFARLYLTKVDDENDSVSFDLRPSDAINIAVRCKVPIQVNRYLAQSDGMKVVESAKLSFQGS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_030493`
TK1151 ID	TkA07G407380
OH-1004 ID	LXL04_030493
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 57.233 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_030493

Location Chr06:117090010-117091769 (-)

Description Similar to BBD2: Bifunctional nuclease 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g19660`	Bifunctional nuclease with both RNase and DNase activities.	No verified direct reference in this release
`At1g75380`	Bifunctional nuclease with both RNase and DNase activities.	Novel bifunctional nucleases, OmBBD and AtBBD1, are involved in abscisic acid-mediated callose deposition in Arabidopsis.2010 · DOI: 10.1104/pp.109.147645

Rice

Reference gene ID	Possible function	Papers / DOI
`Os08g0357000`	Bifunctional nuclease with both RNase and DNase activities.	No verified direct reference in this release
`Os01g0702000`	Bifunctional nuclease with both RNase and DNase activities.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_030493 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009414 response to water deprivation Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0010119 regulation of stomatal movement Biological Process

GO:0016567 protein ubiquitination Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0030891 VCB complex Cellular Component

GO:0004518 nuclease activity Molecular Function

GO:0004530 deoxyribonuclease I activity Molecular Function

GO:0004540 RNA nuclease activity Molecular Function

GO:0016787 hydrolase activity Molecular Function

KEGG gene cross-reference

ath:AT1G19660

ath:AT1G75380

dosa:Os01g0702000

dosa:Os08g0357000

osa:4326932

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.716

Rank 1 · LXL04_030493 · OH-1004

Mitochondrion0.168

Rank 2 · LXL04_030493 · OH-1004

Nucleus0.089

Rank 3 · LXL04_030493 · OH-1004

Cytoplasm0.025

Rank 4 · LXL04_030493 · OH-1004

Cell membrane0.012

Rank 5 · LXL04_030493 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02577.20BFN_dom133-248 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_030493	`PF02577.20`	BFN_dom	133	248	1.1e-22	80.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q93VH2`	Arabidopsis thaliana	Bifunctional nuclease 2	66.258%	Swiss-Prot	strong database homology
`Q9FWS6`	Arabidopsis thaliana	Bifunctional nuclease 1	65.109%	Swiss-Prot	strong database homology
`Q6YZM6`	Oryza sativa subsp. japonica	Bifunctional nuclease 2	61.231%	Swiss-Prot	strong database homology
`Q5N8J3`	Oryza sativa subsp. japonica	Bifunctional nuclease 1	60.700%	Swiss-Prot	strong database homology

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