LXL04_030215 | RubberDandelionOmics

Gene overview

LXL04_030215

Reference: OH-1004 Chr: Chr06 Coordinates: 111015387-111018089 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

891 bp · LXL04_030215|LXL04_030215|OH1004|cDNA

ATGATAATGATGGCTACCTACTCGGCTATACCTAATAAACCAGGAATCACGAAATCAGAAGGTATGAAGTTCTTGGAAGTTGGTGCGGTTTTGGGTGGCTGccaccgccggctgccgccaccaGCCGACCGGTCACCACCCATTTCGAACCTTTCCTTGCAATCGTATACATTACAAGCAGTGTTCCTTTCTCTGTTCAAAGATTGTAACTTATCTGAAATCATTCAAACATGTGATTCTTTGAGGTCAAGATGGTTCAC...

CDS

Download CDS FASTA

891 bp · LXL04_030215|LXL04_030215|OH1004|CDS

ATGATAATGATGGCTACCTACTCGGCTATACCTAATAAACCAGGAATCACGAAATCAGAAGGTATGAAGTTCTTGGAAGTTGGTGCGGTTTTGGGTGGCTGCCACCGCCGGCTGCCGCCACCAGCCGACCGGTCACCACCCATTTCGAACCTTTCCTTGCAATCGTATACATTACAAGCAGTGTTCCTTTCTCTGTTCAAAGATTGTAACTTATCTGAAATCATTCAAACATGTGATTCTTTGAGGTCAAGATGGTTCAC...

Protein

Download Protein FASTA

296 aa · LXL04_030215|LXL04_030215|OH1004|PROTEIN

MIMMATYSAIPNKPGITKSEGMKFLEVGAVLGGCHRRLPPPADRSPPISNLSLQSYTLQAVFLSLFKDCNLSEIIQTCDSLRSRWFTSTLEYQHKEETYEFKGWKSSICCCVSSPALDVVAVGCSDVNIYVHNIRDAHAHDSYVISLHFFANEPVLMSTSADNSIKMWIFDTTDGDPRLLKFRSGHTAPLNCIKRRERSRSNTVALFLPSLYIDLDFFTFHLRNSLRSITYGICYGILWLWNQVHSKLATELATDKEPWN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_030215`
TK1151 ID	TkA04G149790
OH-1004 ID	LXL04_030215
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	89.600
Protein coverage (%)	TK1151 70.930 / OH-1004 45.608 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`LXL04_030215`
Location	Chr06:111015387-111018089 (-)
Description	Similar to WDR36: WD repeat-containing protein 36
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_030215` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0006364 rRNA processing Biological Process GO:0030490 maturation of SSU-rRNA Biological Process GO:0042274 ribosomal small subunit biogenesis Biological Process GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0005730 nucleolus Cellular Component GO:0005829 cytosol Cellular Component GO:0032040 small-subunit processome Cellular Component GO:0032153 cell division site Cellular Component GO:0034388 Pwp2p-containing subcomplex of 90S preribosome Cellular Component GO:0072686 mitotic spindle Cellular Component GO:0003723 RNA binding Molecular Function
KEGG gene cross-reference	hsa:134430 spo:2539299 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.412

Rank 1 · LXL04_030215 · OH-1004

Cytoplasm0.337

Rank 2 · LXL04_030215 · OH-1004

Mitochondrion0.131

Rank 3 · LXL04_030215 · OH-1004

Cell membrane0.122

Rank 4 · LXL04_030215 · OH-1004

Endoplasmic reticulum0.113

Rank 5 · LXL04_030215 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23414.2Beta-prop_EML_290-174 aa

PF25175.2Beta-prop_WDR592-171 aa

PF25173.2Beta-prop_WDR3_1st93-172 aa

PF25171.2Beta-prop_WDR36-Utp21_1st94-136 aa

PF25175.2Beta-prop_WDR5134-194 aa

PF25171.2Beta-prop_WDR36-Utp21_1st138-171 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_030215	`PF23414.2`	Beta-prop_EML_2	90	174	2e-06	28.1
LXL04_030215	`PF25175.2`	Beta-prop_WDR5	92	171	5.6e-10	39.7
LXL04_030215	`PF25173.2`	Beta-prop_WDR3_1st	93	172	1.2e-07	32.3
LXL04_030215	`PF25171.2`	Beta-prop_WDR36-Utp21_1st	94	136	4.2e-21	76.3
LXL04_030215	`PF25175.2`	Beta-prop_WDR5	134	194	5.6e-10	39.7
LXL04_030215	`PF25171.2`	Beta-prop_WDR36-Utp21_1st	138	171	4.2e-21	76.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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