LXL04_030043 | RubberDandelionOmics

Gene overview

LXL04_030043

Reference: OH-1004 Chr: Chr06 Coordinates: 106320968-106321411 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

444 bp · LXL04_030043|LXL04_030043|OH1004|cDNA

ATGGCCTCCGCGTTCTTGTCTGCACCAAGCTTCCAAGGTCTCCGGCCACTCAACAAAGCCACAGACTCCCCCTCCCTCTTCCTCACCAAACCCACCGTCTCCATCGCCCCAAAGAAGAAATTCAACTGTGGAGTGAAGGCGGAGCTGCTAAACCCATCTCTGGTCATCAGCCTGAGCACCGGGTTATCTCTTTTCTTGGGAAGATTTGTCTTTTTTAACTTCCAAAGAGAAAACGTGGCCAAACAAGGGTTGCCGGAGCA...

CDS

Download CDS FASTA

444 bp · LXL04_030043|LXL04_030043|OH1004|CDS

ATGGCCTCCGCGTTCTTGTCTGCACCAAGCTTCCAAGGTCTCCGGCCACTCAACAAAGCCACAGACTCCCCCTCCCTCTTCCTCACCAAACCCACCGTCTCCATCGCCCCAAAGAAGAAATTCAACTGTGGAGTGAAGGCGGAGCTGCTAAACCCATCTCTGGTCATCAGCCTGAGCACCGGGTTATCTCTTTTCTTGGGAAGATTTGTCTTTTTTAACTTCCAAAGAGAAAACGTGGCCAAACAAGGGTTGCCGGAGCA...

Protein

Download Protein FASTA

147 aa · LXL04_030043|LXL04_030043|OH1004|PROTEIN

MASAFLSAPSFQGLRPLNKATDSPSLFLTKPTVSIAPKKKFNCGVKAELLNPSLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGITHFEAGDTRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPNFF

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_030043`
TK1151 ID	TkA07G372740
OH-1004 ID	LXL04_030043
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	92.500
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_030043

Location Chr06:106320968-106321411 (-)

Description Similar to PSAG: Photosystem I reaction center subunit V, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g55670`	Not yet known.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_030043 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009773 photosynthetic electron transport in photosystem I Biological Process

GO:0009780 photosynthetic NADP+ reduction Biological Process

GO:0015979 photosynthesis Biological Process

GO:0042550 photosystem I stabilization Biological Process

GO:0050821 protein stabilization Biological Process

GO:0005634 nucleus Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009522 photosystem I Cellular Component

GO:0009534 chloroplast thylakoid Cellular Component

GO:0009535 chloroplast thylakoid membrane Cellular Component

GO:0009579 thylakoid Cellular Component

GO:0009941 chloroplast envelope Cellular Component

KEGG gene cross-reference

ath:AT1G55670

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.982

Rank 1 · LXL04_030043 · OH-1004

Mitochondrion0.019

Rank 2 · LXL04_030043 · OH-1004

Nucleus0.014

Rank 3 · LXL04_030043 · OH-1004

Cytoplasm0.009

Rank 4 · LXL04_030043 · OH-1004

Cell membrane0.007

Rank 5 · LXL04_030043 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01241.24PSI_PSAK51-142 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_030043	`PF01241.24`	PSI_PSAK	51	142	2.1e-22	79.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9S7N7`	Arabidopsis thaliana	Photosystem I reaction center subunit V, chloroplastic	77.536%	Swiss-Prot	strong database homology

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