LXL04_030033 | RubberDandelionOmics

Gene overview

LXL04_030033

Reference: OH-1004 Chr: Chr06 Coordinates: 106131004-106134185 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1530 bp · LXL04_030033|LXL04_030033|OH1004|cDNA

ATGACCCTTCATGATCATCAACGCTCAAGGAATCCATCTCCCGAGAGAAGCTGGGCTGAAAAATGTCTGGGTTGCGCCGGCGGCCTACAGCAGTTCTGGCCGATGGTGGTTGTCCGCAAATGGCTCAATATTCCTGATAATATTTCAGATTACAGTGCCGATTCCGATGATAGCATCCATGATCCCGTTGCTGCAGAAGCGTTGTATCcttggccaaaagaatccagaCTCAAGGATGAGAACGGAAATGATTTTGGGAG...

CDS

Download CDS FASTA

1530 bp · LXL04_030033|LXL04_030033|OH1004|CDS

ATGACCCTTCATGATCATCAACGCTCAAGGAATCCATCTCCCGAGAGAAGCTGGGCTGAAAAATGTCTGGGTTGCGCCGGCGGCCTACAGCAGTTCTGGCCGATGGTGGTTGTCCGCAAATGGCTCAATATTCCTGATAATATTTCAGATTACAGTGCCGATTCCGATGATAGCATCCATGATCCCGTTGCTGCAGAAGCGTTGTATCCTTGGCCAAAAGAATCCAGACTCAAGGATGAGAACGGAAATGATTTTGGGAG...

Protein

Download Protein FASTA

509 aa · LXL04_030033|LXL04_030033|OH1004|PROTEIN

MTLHDHQRSRNPSPERSWAEKCLGCAGGLQQFWPMVVVRKWLNIPDNISDYSADSDDSIHDPVAAEALYPWPKESRLKDENGNDFGSDPNGPFPKSRRRKSETSRSQYIETKELKVSVNTWNLGGELPPDDLNIKDLLDTDYPADIYVIGFQEIIPLNAGNIFGSEDTYPISIWENIIRETLNKIQPIKTEFESYSDPPSPSRFNIENEVLLGSDNDSEGQNCKYANGNNWLEKLDLDSIMYKKRPKYVRIVSKQMVGVF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_030033`
TK1151 ID	TkA07G372030
OH-1004 ID	LXL04_030033
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	99.600
Protein coverage (%)	TK1151 97.015 / OH-1004 51.081 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_030033

Location Chr06:106131004-106134185 (+)

Description Similar to IP5P3: Type IV inositol polyphosphate 5-phosphatase 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g71710`	Has phosphatase activity toward PtdIns(4,5)P2 and PtdIns(3,4,5)P3.	No verified direct reference in this release
`At3g63240`	Type I inositol polyphosphate 5-phosphatase 4.	No verified direct reference in this release
`At2g37440`	Type I inositol polyphosphate 5-phosphatase 8.	No verified direct reference in this release
`At1g34120`	Has phosphatase activity toward Ins(1,4,5)P3 and Ins(1,3,4,5)P4, but not toward Ins(1,4)P2, Ins(1)P.	No verified direct reference in this release
`At2g01900`	Has phosphatase activity toward PtdIns(4,5)P2 and at a lower extent toward PtdIns(3,4,5)P3 but not toward Ins(1,4,5)P3.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_030033 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009845 seed germination Biological Process

GO:0032957 inositol trisphosphate metabolic process Biological Process

GO:0043647 inositol phosphate metabolic process Biological Process

GO:0046856 phosphatidylinositol dephosphorylation Biological Process

GO:0090351 seedling development Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0004439 phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity Molecular Function

GO:0004445 inositol-polyphosphate 5-phosphatase activity Molecular Function

GO:0034485 phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity Molecular Function

GO:0046030 inositol trisphosphate phosphatase activity Molecular Function

KEGG gene cross-reference

ath:AT1G34120

ath:AT1G71710

ath:AT2G37440

ath:AT3G63240

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.373

Rank 1 · LXL04_030033 · OH-1004

Nucleus0.245

Rank 2 · LXL04_030033 · OH-1004

Cell membrane0.204

Rank 3 · LXL04_030033 · OH-1004

Golgi apparatus0.110

Rank 4 · LXL04_030033 · OH-1004

Lysosome / Vacuole0.093

Rank 5 · LXL04_030033 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF22669.3Exo_endo_phos2120-469 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_030033	`PF22669.3`	Exo_endo_phos2	120	469	7.7e-74	249.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8H0Z6`	Arabidopsis thaliana	Type IV inositol polyphosphate 5-phosphatase 3	64.341%	Swiss-Prot	moderate database homology
`Q8GTS0`	Arabidopsis thaliana	Type I inositol polyphosphate 5-phosphatase 4	38.520%	Swiss-Prot	moderate database homology
`Q0WT19`	Arabidopsis thaliana	Type I inositol polyphosphate 5-phosphatase 8	41.280%	Swiss-Prot	moderate database homology
`Q84MA2`	Arabidopsis thaliana	Type I inositol polyphosphate 5-phosphatase 1	60.558%	Swiss-Prot	weak database homology
`Q9SIS4`	Arabidopsis thaliana	Type IV inositol polyphosphate 5-phosphatase 9	42.308%	Swiss-Prot	moderate database homology

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