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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_030021
Reference: OH-1004 Chr: Chr06 Coordinates: 105865192-105867995 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1884 bp · LXL04_030021|LXL04_030021|OH1004|cDNA

ATGAATGAGATGGGGAGCTTCGCTCTGATATTGCTTTTCGTGTGTTCGATCATCATTCTTCATCCAGCGAAGCTCATTTACGCGAATATGGAAGGTGATGCTTTGCATAGTTTGAGGACTAATTTAGATGATCCAAATAGCGTACTCCAAAGTTGGGATCCGACCCTTGTAAACCCTTGCACTTGGTTCCATGTCACCTGCAACAATGATAATAGTGTCATACGAGTCGATCTGGGAAATGCGGCTCTATCTGGCACATT...

CDS

Download CDS FASTA

1884 bp · LXL04_030021|LXL04_030021|OH1004|CDS

ATGAATGAGATGGGGAGCTTCGCTCTGATATTGCTTTTCGTGTGTTCGATCATCATTCTTCATCCAGCGAAGCTCATTTACGCGAATATGGAAGGTGATGCTTTGCATAGTTTGAGGACTAATTTAGATGATCCAAATAGCGTACTCCAAAGTTGGGATCCGACCCTTGTAAACCCTTGCACTTGGTTCCATGTCACCTGCAACAATGATAATAGTGTCATACGAGTCGATCTGGGAAATGCGGCTCTATCTGGCACATT...

Protein

Download Protein FASTA

627 aa · LXL04_030021|LXL04_030021|OH1004|PROTEIN

MNEMGSFALILLFVCSIIILHPAKLIYANMEGDALHSLRTNLDDPNSVLQSWDPTLVNPCTWFHVTCNNDNSVIRVDLGNAALSGTLVPQIGLLKNLQYLELYSNNISGPIPNDLGNLTNLVSLDLYLNSFSGPIPVTLGKLSKLRFLRLNNNSLTGPIPMQLTNITSLQVLDLSNNRLSGSVPDNGSFSLFTPISFANNLDLCGPVTGHPCPGSPPFSPPPPFVPPPPISIPGGNSATGAIAGGVAAGAALLFAAPAIA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_030021
TK1151 IDTkA07G370980
OH-1004 IDLXL04_030021
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_030021
LocationChr06:105865192-105867995 (-)
DescriptionSimilar to BAK1: LRR receptor kinase BAK1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g71830 Dual specificity kinase acting on both serine/threonine- and tyrosine-containing substrates.
Role of threonines in the Arabidopsis thaliana somatic embryogenesis receptor kinase 1 activation loop in phosphorylation.2001 · DOI: 10.1074/jbc.m102381200
In vivo hexamerization and characterization of the Arabidopsis AAA ATPase CDC48A complex using forster resonance energy transfer-fluorescence lifetime imaging microscopy and fluorescence correlation spectroscopy.2007 · DOI: 10.1104/pp.107.103986
At1g34210 Serine/threonine-kinase involved in brassinosteroid-dependent and -independent signaling pathways.
Arabidopsis SOMATIC EMBRYOGENESIS RECEPTOR KINASE proteins serve brassinosteroid-dependent and -independent signaling pathways.2008 · DOI: 10.1104/pp.108.123216

Rice

Reference gene IDPossible functionPapers / DOI
Os08g0174700 LRR receptor kinase involved in defense response.
Engineering OsBAK1 gene as a molecular tool to improve rice architecture for high yield.2009 · DOI: 10.1111/j.1467-7652.2009.00444.x
A subset of OsSERK genes, including OsBAK1, affects normal growth and leaf development of rice.2011 · DOI: 10.1007/s10059-011-0178-4
UniProt: B8BB68 LRR receptor kinase involved in defense response. No verified direct reference in this release
Os04g0457800 LRR receptor kinase involved in positive regulation of somatic embryogenesis and defense response against the rice blast fungus pathogen Magnaporthe oryzae.
Rice SERK1 gene positively regulates somatic embryogenesis of cultured cell and host defense response against fungal infection.2005 · DOI: 10.1007/s00425-005-1534-4
An XA21-associated kinase (OsSERK2) regulates immunity mediated by the XA21 and XA3 immune receptors.2014 · DOI: 10.1093/mp/ssu003
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_030021 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0006468 protein phosphorylation Biological Process
GO:0006952 defense response Biological Process
GO:0007030 Golgi organization Biological Process
GO:0009556 microsporogenesis Biological Process
GO:0009742 brassinosteroid mediated signaling pathway Biological Process
GO:0009793 embryo development ending in seed dormancy Biological Process
GO:0010152 pollen maturation Biological Process
GO:0010227 floral organ abscission Biological Process
GO:0010262 somatic embryogenesis Biological Process
GO:0030154 cell differentiation Biological Process
GO:0040008 regulation of growth Biological Process
GO:0045089 positive regulation of innate immune response Biological Process
KEGG gene cross-reference
ath:AT1G34210
ath:AT1G71830
dosa:Os04g0457800
dosa:Os08g0174700
osa:4336035
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.884
Rank 1 · LXL04_030021 · OH-1004
Endoplasmic reticulum0.074
Rank 2 · LXL04_030021 · OH-1004
Cytoplasm0.073
Rank 3 · LXL04_030021 · OH-1004
Nucleus0.049
Rank 4 · LXL04_030021 · OH-1004
Lysosome / Vacuole0.021
Rank 5 · LXL04_030021 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08263.18LRRNT_229-68 aa
PF23598.2LRR_1484-176 aa
PF12799.14LRR_495-129 aa
PF12799.14LRR_4144-179 aa
PF00069.32Pkinase305-522 aa
PF07714.24PK_Tyr_Ser-Thr307-578 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_030021PF08263.18LRRNT_229688.6e-1142.7
LXL04_030021PF23598.2LRR_14841761.7e-1040.9
LXL04_030021PF12799.14LRR_4951297.5e-1039.5
LXL04_030021PF12799.14LRR_41441797.5e-1039.5
LXL04_030021PF00069.32Pkinase3055227.1e-42144.3
LXL04_030021PF07714.24PK_Tyr_Ser-Thr3075783.8e-43148.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q94AG2Arabidopsis thalianaSomatic embryogenesis receptor kinase 187.781%Swiss-Protstrong database homology
Q9XIC7Arabidopsis thalianaSomatic embryogenesis receptor kinase 290.833%Swiss-Protstrong database homology
Q6Z4U4Oryza sativa subsp. japonicaLRR receptor kinase BAK187.356%Swiss-Protstrong database homology
B8BB68Oryza sativa subsp. indicaLRR receptor kinase BAK187.356%Swiss-Protstrong database homology
Q7XV05Oryza sativa subsp. japonicaLRR receptor kinase SERK285.714%Swiss-Protstrong database homology

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