LXL04_029991 | RubberDandelionOmics

Gene overview

LXL04_029991

Reference: OH-1004 Chr: Chr06 Coordinates: 105104589-105107153 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1080 bp · LXL04_029991|LXL04_029991|OH1004|cDNA

ATGGATCATGAAGCGGATGCCTTCCGGACGGATTTGATGACCATAACTCGGTTTGTGCTGAATGAACAGTCGAAGCATCCGGAGTCACGAGGGGATTTCAGTATCCTGCTCAGTAACATTGTTCTAGGTTGCAAGTTCGTCTGCTCCGCTGTTAACAAGGTCATCTTATTTCCCCCTAATCAATTGCATTCTGTGTTTTTTTACAAGCGGCAGGTTTGGCAAAACTCATTGGACTTGCAGGGGAGACGAATGTGCAGGCA...

CDS

Download CDS FASTA

1080 bp · LXL04_029991|LXL04_029991|OH1004|CDS

ATGGATCATGAAGCGGATGCCTTCCGGACGGATTTGATGACCATAACTCGGTTTGTGCTGAATGAACAGTCGAAGCATCCGGAGTCACGAGGGGATTTCAGTATCCTGCTCAGTAACATTGTTCTAGGTTGCAAGTTCGTCTGCTCCGCTGTTAACAAGGTCATCTTATTTCCCCCTAATCAATTGCATTCTGTGTTTTTTTACAAGCGGCAGGTTTGGCAAAACTCATTGGACTTGCAGGGGAGACGAATGTGCAGGCA...

Protein

Download Protein FASTA

359 aa · LXL04_029991|LXL04_029991|OH1004|PROTEIN

MDHEADAFRTDLMTITRFVLNEQSKHPESRGDFSILLSNIVLGCKFVCSAVNKVILFPPNQLHSVFFYKRQVWQNSLDLQGRRMCRQGEEQKKLDVLSNEVFVKALVSSGRTSILVSEEDEEAIFVEKSKRGKYCVVFDPLDGSSNIDCGVSIGTIFGIYMIKDGHDACIEDVLQPGKEMLAAGYCMYGSSCTLVLSTGSGVNGFTLDPSLGEFILTHPDIKTPKKGKIYSVNEGNAKNWDGPTAKYVERCKYPTDGSPA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_029991`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_029991

Location Chr06:105104589-105107153 (+)

Description Similar to Fructose-1,6-bisphosphatase, cytosolic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

No hit for this species in the current source table.

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0866400`	Catalyzes the first irreversible reaction from fructose-1,6-bisphosphate to fructose-6-phosphate and inorganic phosphate and plays an important regulatory role in sucrose biosynthesis and metabolism.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_029991 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005985 sucrose metabolic process Biological Process

GO:0005986 sucrose biosynthetic process Biological Process

GO:0006000 fructose metabolic process Biological Process

GO:0006002 fructose 6-phosphate metabolic process Biological Process

GO:0006094 gluconeogenesis Biological Process

GO:0015979 photosynthesis Biological Process

GO:0030388 fructose 1,6-bisphosphate metabolic process Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0042132 fructose 1,6-bisphosphate 1-phosphatase activity Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

bna:106401056

dosa:Os01g0866400

sot:102588954

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.716

Rank 1 · LXL04_029991 · OH-1004

Nucleus0.339

Rank 2 · LXL04_029991 · OH-1004

Endoplasmic reticulum0.071

Rank 3 · LXL04_029991 · OH-1004

Mitochondrion0.061

Rank 4 · LXL04_029991 · OH-1004

Peroxisome0.060

Rank 5 · LXL04_029991 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00316.26FBPase13-54 aa

PF00316.26FBPase86-219 aa

PF18913.6FBPase_C224-352 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_029991	`PF00316.26`	FBPase	13	54	9.4e-72	241.3
LXL04_029991	`PF00316.26`	FBPase	86	219	9.4e-72	241.3
LXL04_029991	`PF18913.6`	FBPase_C	224	352	6.3e-50	169.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q0JHF8`	Oryza sativa subsp. japonica	Fructose-1,6-bisphosphatase, cytosolic	79.272%	Swiss-Prot	strong database homology

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