LXL04_029952 | RubberDandelionOmics

Gene overview

LXL04_029952

Reference: OH-1004 Chr: Chr06 Coordinates: 103869644-103870672 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

984 bp · LXL04_029952|LXL04_029952|OH1004|cDNA

ATGATAATGAGGCTCCTATATCTCCattttttcttcatcttcttcaacctcGCTTCTTCATCGCCTTCTACTCCGCCGTCGGACTTCGCCCTTTTCGGCACTACCACCATCAATCACACCTCAATCATCCTCACTCAACATCTCAAGAACTGCATCTCATCAAACATACCAGACTCAAATATCGGAAGAGTATTTTACAAACACCCTATCCATTTTCTTGATTCCTCCTTCAACGCCACCGATTCTTTCTGGGTACGCTT...

CDS

Download CDS FASTA

984 bp · LXL04_029952|LXL04_029952|OH1004|CDS

ATGATAATGAGGCTCCTATATCTCCATTTTTTCTTCATCTTCTTCAACCTCGCTTCTTCATCGCCTTCTACTCCGCCGTCGGACTTCGCCCTTTTCGGCACTACCACCATCAATCACACCTCAATCATCCTCACTCAACATCTCAAGAACTGCATCTCATCAAACATACCAGACTCAAATATCGGAAGAGTATTTTACAAACACCCTATCCATTTTCTTGATTCCTCCTTCAACGCCACCGATTCTTTCTGGGTACGCTT...

Protein

Download Protein FASTA

327 aa · LXL04_029952|LXL04_029952|OH1004|PROTEIN

MIMRLLYLHFFFIFFNLASSSPSTPPSDFALFGTTTINHTSIILTQHLKNCISSNIPDSNIGRVFYKHPIHFLDSSFNATDSFWVRFTFTIIPPPPPCFIGEGFAFLITSNPNYLPHSNGGIGLPKSLDQNTIAIEFDTKLDLDPGDINDNHVGIDLDSIFSVASIDLKMGGINLKSGRQITVGYNQKLLESPILVAVPIDLTKRLDGSMYVGFSAANGRGSSIHMIHSLHFKRAKSLSPIQHEAFWSENCLICFPEDVI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_029952`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_029952

Location Chr06:103869644-103870672 (+)

Description Similar to LECRKS6: L-type lectin-domain containing receptor kinase S.6

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g42120`	Involved in resistance response to the pathogenic oomycetes Phytophthora infestans and Phytophthora capsici and to the pathogenic bacteria Pseudomonas syringae.	No verified direct reference in this release
`At5g55830`	Involved in resistance response to the pathogenic oomycetes Phytophthora infestans and Phytophthora capsici.	No verified direct reference in this release
`At5g03140`	Involved in resistance response to the pathogenic oomycetes Phytophthora infestans and Phytophthora capsici.	No verified direct reference in this release
`At3g53380`	L-type lectin-domain containing receptor kinase VIII.1.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0459600`	Legume-lectin receptor-like kinase required for normal pollen development and male fertility.	Rice pollen aperture formation is regulated by the interplay between OsINP1 and OsDAF1.2020 · DOI: 10.1038/s41477-020-0630-6

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_029952 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0002229 defense response to oomycetes Biological Process

GO:0009555 pollen development Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0046777 protein autophosphorylation Biological Process

GO:0062075 pollen aperture formation Biological Process

GO:0005634 nucleus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0062074 pollen aperture Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT3G53380

ath:AT5G03140

ath:AT5G42120

ath:AT5G55830

dosa:Os02g0459600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.313

Rank 1 · LXL04_029952 · OH-1004

Endoplasmic reticulum0.310

Rank 2 · LXL04_029952 · OH-1004

Lysosome / Vacuole0.159

Rank 3 · LXL04_029952 · OH-1004

Cytoplasm0.130

Rank 4 · LXL04_029952 · OH-1004

Nucleus0.106

Rank 5 · LXL04_029952 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00139.27Lectin_legB25-237 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_029952	`PF00139.27`	Lectin_legB	25	237	1.9e-36	126.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FHX3`	Arabidopsis thaliana	L-type lectin-domain containing receptor kinase S.6	42.248%	Swiss-Prot	moderate database homology
`Q9FHG4`	Arabidopsis thaliana	Probable L-type lectin-domain containing receptor kinase S.7	29.714%	Swiss-Prot	weak database homology
`Q9LYX1`	Arabidopsis thaliana	L-type lectin-domain containing receptor kinase VIII.2	32.547%	Swiss-Prot	moderate database homology
`Q9LFH9`	Arabidopsis thaliana	L-type lectin-domain containing receptor kinase VIII.1	31.600%	Swiss-Prot	moderate database homology
`A0A0P0VIP0`	Oryza sativa subsp. japonica	L-type lectin-domain containing receptor kinase S.7	32.787%	Swiss-Prot	moderate database homology

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