LXL04_029947 | RubberDandelionOmics

Gene overview

LXL04_029947

Reference: OH-1004 Chr: Chr06 Coordinates: 103798879-103801249 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1422 bp · LXL04_029947|LXL04_029947|OH1004|cDNA

ATGGCGTCACAACAAGAAAGAAAGCCACATGTAGTTTGCATACCAGTCCCGCTACAAGGTCACATTAACCCAATGCTAAAACTCGCCAAAATCCTCCATTCGAAAGGCTTTCTCATCACCTTCGTCAACACCGAGTTCAACCACAAACGCCTCCTCAGATCTCAGGGCTCCGACGCCTTAACCAATCTCCCTTCTTTCCGGTTTGAGACAATTCCCGACGGCCTCCAAACGCCGGAAGATCATGACGCCTCACAAGACAT...

CDS

Download CDS FASTA

1422 bp · LXL04_029947|LXL04_029947|OH1004|CDS

ATGGCGTCACAACAAGAAAGAAAGCCACATGTAGTTTGCATACCAGTCCCGCTACAAGGTCACATTAACCCAATGCTAAAACTCGCCAAAATCCTCCATTCGAAAGGCTTTCTCATCACCTTCGTCAACACCGAGTTCAACCACAAACGCCTCCTCAGATCTCAGGGCTCCGACGCCTTAACCAATCTCCCTTCTTTCCGGTTTGAGACAATTCCCGACGGCCTCCAAACGCCGGAAGATCATGACGCCTCACAAGACAT...

Protein

Download Protein FASTA

473 aa · LXL04_029947|LXL04_029947|OH1004|PROTEIN

MASQQERKPHVVCIPVPLQGHINPMLKLAKILHSKGFLITFVNTEFNHKRLLRSQGSDALTNLPSFRFETIPDGLQTPEDHDASQDIPSLAKSIEETCLDPFKNLLTKVSGSCSPVDFIVSDFLMGFTLAAATELGIPEILLWTSGAGSLICYDQYPNLLEKGLMPLKDPSFLDTVVDFIPTMPGIRLKDFPPFIRIMYPGDEYMVKFFHLQIERAKMASAIIFNSFRELESDIFDTLSSIFPPCYAIGPFHLLEDKIAN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_029947`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_029947

Location Chr06:103798879-103801249 (-)

Description Similar to UGT85A24: 7-deoxyloganetin glucosyltransferase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g22400`	Involved in the O-glucosylation of trans-zeatin and dihydrozeatin.	N-glucosylation of cytokinins by glycosyltransferases of Arabidopsis thaliana.2004 · DOI: 10.1074/jbc.m409569200
`At1g22360`	UDP-glycosyltransferase 85A2.	No verified direct reference in this release
`At1g22380`	UDP-glycosyltransferase 85A3.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_029947 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:1900994 (-)-secologanin biosynthetic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0010494 cytoplasmic stress granule Cellular Component

GO:0015020 glucuronosyltransferase activity Molecular Function

GO:0035251 UDP-glucosyltransferase activity Molecular Function

GO:0050403 trans-zeatin O-beta-D-glucosyltransferase activity Molecular Function

GO:0050502 cis-zeatin O-beta-D-glucosyltransferase activity Molecular Function

GO:0080043 quercetin 3-O-glucosyltransferase activity Molecular Function

GO:0080044 quercetin 7-O-glucosyltransferase activity Molecular Function

KEGG gene cross-reference

ag:BAK55737

ag:BAK55749

ath:AT1G22360

ath:AT1G22380

ath:AT1G22400

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.780

Rank 1 · LXL04_029947 · OH-1004

Nucleus0.213

Rank 2 · LXL04_029947 · OH-1004

Peroxisome0.069

Rank 3 · LXL04_029947 · OH-1004

Endoplasmic reticulum0.068

Rank 4 · LXL04_029947 · OH-1004

Plastid0.051

Rank 5 · LXL04_029947 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF26168.1Glyco_transf_N11-136 aa

PF00201.25UDPGT233-433 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_029947	`PF26168.1`	Glyco_transf_N	11	136	3.6e-12	47.4
LXL04_029947	`PF00201.25`	UDPGT	233	433	9.4e-27	94.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SK82`	Arabidopsis thaliana	UDP-glycosyltransferase 85A1	54.470%	Swiss-Prot	strong database homology
`Q9ZWJ3`	Arabidopsis thaliana	UDP-glycosyltransferase 85A2	54.393%	Swiss-Prot	strong database homology
`Q9LMF1`	Arabidopsis thaliana	UDP-glycosyltransferase 85A3	54.641%	Swiss-Prot	strong database homology

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