LXL04_029918 | RubberDandelionOmics

Gene overview

LXL04_029918

Reference: OH-1004 Chr: Chr06 Coordinates: 103332414-103337983 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2952 bp · LXL04_029918|LXL04_029918|OH1004|cDNA

ATGAGCATAATTGGATTTACAAGTTTCGGTTTTACTTTAAAAAGCAGCAAGCAAAACCTTCCTGTGGTTGCTTCAGCTTGCTCCCCTGCAAGAGAAGATTCAGAAGAAAATGGATTCGGGGCTTTGAGAAGAAGAACTGCAACCACAGGTTGGAGGACTTACCGCCGACCAGCTGAGAAGTCCGGCGGACATGCAGTTGGGCGGAGTCCTATCATCCCGTACGCCTTTTCGGTACCTGATGGTTGGGAAGAGGTAAGCAA...

CDS

Download CDS FASTA

2952 bp · LXL04_029918|LXL04_029918|OH1004|CDS

ATGAGCATAATTGGATTTACAAGTTTCGGTTTTACTTTAAAAAGCAGCAAGCAAAACCTTCCTGTGGTTGCTTCAGCTTGCTCCCCTGCAAGAGAAGATTCAGAAGAAAATGGATTCGGGGCTTTGAGAAGAAGAACTGCAACCACAGGTTGGAGGACTTACCGCCGACCAGCTGAGAAGTCCGGCGGACATGCAGTTGGGCGGAGTCCTATCATCCCGTACGCCTTTTCGGTACCTGATGGTTGGGAAGAGGTAAGCAA...

Protein

Download Protein FASTA

983 aa · LXL04_029918|LXL04_029918|OH1004|PROTEIN

MSIIGFTSFGFTLKSSKQNLPVVASACSPAREDSEENGFGALRRRTATTGWRTYRRPAEKSGGHAVGRSPIIPYAFSVPDGWEEVSKEEKMSSTTNQVIRCKAAVAWEAGKPLVMEEVEVAPPQKMEVRIKILFTSLCHTDIYFWEAKGQNAVFPRIFGHEAGGVVESVGEGVTDLQPGDHVLPVFTGECKECAHCKSEESNMCDLLRINTDRGVMIHDQTSRFSINGKPIFHFVGTSTFSEYTVVHVGCLAKINRLAPL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_029918`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_029918`
Location	Chr06:103332414-103337983 (-)
Description	Similar to ADH2: Alcohol dehydrogenase 2
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_029918` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0046294 formaldehyde catabolic process Biological Process GO:0005829 cytosol Cellular Component GO:0004022 alcohol dehydrogenase (NAD+) activity Molecular Function GO:0008270 zinc ion binding Molecular Function GO:0051903 S-(hydroxymethyl)glutathione dehydrogenase [NAD(P)+] activity Molecular Function
KEGG gene cross-reference	mdm:103428551 sly:544074 sot:102577519 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.583

Rank 1 · LXL04_029918 · OH-1004

Endoplasmic reticulum0.111

Rank 2 · LXL04_029918 · OH-1004

Plastid0.066

Rank 3 · LXL04_029918 · OH-1004

Cell membrane0.059

Rank 4 · LXL04_029918 · OH-1004

Cytoplasm0.041

Rank 5 · LXL04_029918 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08240.18ADH_N125-254 aa

PF16912.12Glu_dehyd_C287-454 aa

PF00107.33ADH_zinc_N296-427 aa

PF03016.21Exostosin_GT47610-895 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_029918	`PF08240.18`	ADH_N	125	254	1e-19	71.4
LXL04_029918	`PF16912.12`	Glu_dehyd_C	287	454	2.8e-06	27.6
LXL04_029918	`PF00107.33`	ADH_zinc_N	296	427	1.6e-28	100.0
LXL04_029918	`PF03016.21`	Exostosin_GT47	610	895	1.4e-36	127.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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