LXL04_029866 | RubberDandelionOmics

Gene overview

LXL04_029866

Reference: OH-1004 Chr: Chr06 Coordinates: 102494639-102495308 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

492 bp · LXL04_029866|LXL04_029866|OH1004|cDNA

ATGAAGGGGAAATCGTTAACATCAGGGACCTGCTTCCCGTTAAACACAGGCGCCAAGATTCCAGCGATAGGGCTCAGGACATGGCAGAGCAGCGGCGGTCTCTGTGCAGATGAAGCTCCAATCAGAAGTGAGAACGGGGAACGCCGGATTTACCTGAACCAGGCTGGATCACTCAGCAACAGCAACGATGATGGTCGGTCGAGTCAAACTCGGGCTCAGATCTGGATCAGTTTGAGATTTTCAAGCCCTCCAATAAATTT...

CDS

Download CDS FASTA

492 bp · LXL04_029866|LXL04_029866|OH1004|CDS

ATGAAGGGGAAATCGTTAACATCAGGGACCTGCTTCCCGTTAAACACAGGCGCCAAGATTCCAGCGATAGGGCTCAGGACATGGCAGAGCAGCGGCGGTCTCTGTGCAGATGAAGCTCCAATCAGAAGTGAGAACGGGGAACGCCGGATTTACCTGAACCAGGCTGGATCACTCAGCAACAGCAACGATGATGGTCGGTCGAGTCAAACTCGGGCTCAGATCTGGATCAGTTTGAGATTTTCAAGCCCTCCAATAAATTT...

Protein

Download Protein FASTA

163 aa · LXL04_029866|LXL04_029866|OH1004|PROTEIN

MKGKSLTSGTCFPLNTGAKIPAIGLRTWQSSGGLCADEAPIRSENGERRIYLNQAGSLSNSNDDGRSSQTRAQIWISLRFSSPPINFTNRFQNGFAIGAAVAKPDAIVVDIDGVGSFMMNVQELATIRVENLPVKILLLNNQHLGMVVQWEDRFIKQIEHTRI

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_029866`
TK1151 ID	TkA01G588890
OH-1004 ID	LXL04_029866
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	80.800
Protein coverage (%)	TK1151 72.222 / OH-1004 47.853 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_029866

Location Chr06:102494639-102495308 (-)

Description Similar to Acetolactate synthase 1, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g48560`	Catalyzes the formation of acetolactate from pyruvate, the first step in valine and isoleucine biosynthesis.	A Mutation Causing Imidazolinone Resistance Maps to the Csr1 Locus of Arabidopsis thaliana.1990 · DOI: 10.1104/pp.92.4.1081 Expression, purification and characterization of Arabidopsis thaliana acetohydroxyacid synthase.1997 · DOI: 10.1042/bj3270161 Herbicide-resistant forms of Arabidopsis thaliana acetohydroxyacid synthase: characterization of the catalytic properties and sensitivity to inhibitors of four defined mutants.1998 · DOI: 10.1042/bj3330765

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_029866 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009097 isoleucine biosynthetic process Biological Process

GO:0009099 L-valine biosynthetic process Biological Process

GO:0009635 response to herbicide Biological Process

GO:0005948 acetolactate synthase complex Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0000287 magnesium ion binding Molecular Function

GO:0003984 acetolactate synthase activity Molecular Function

GO:0030976 thiamine pyrophosphate binding Molecular Function

GO:0050660 flavin adenine dinucleotide binding Molecular Function

KEGG gene cross-reference

ath:AT3G48560

bna:106353715

bna:106353716

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.348

Rank 1 · LXL04_029866 · OH-1004

Nucleus0.186

Rank 2 · LXL04_029866 · OH-1004

Extracellular0.166

Rank 3 · LXL04_029866 · OH-1004

Mitochondrion0.142

Rank 4 · LXL04_029866 · OH-1004

Peroxisome0.092

Rank 5 · LXL04_029866 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02775.27TPP_enzyme_C92-156 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_029866	`PF02775.27`	TPP_enzyme_C	92	156	2.6e-18	67.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P17597`	Arabidopsis thaliana	Acetolactate synthase, chloroplastic	88.525%	Swiss-Prot	weak database homology

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