LXL04_029855 | RubberDandelionOmics

Gene overview

LXL04_029855

Reference: OH-1004 Chr: Chr06 Coordinates: 102161437-102163809 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2301 bp · LXL04_029855|LXL04_029855|OH1004|cDNA

ATGGCCTTCATATTACTTATCTTTCTGAGAATCGTCTTCCTTTTAGTCACACAAGTATCTGACGTCACCTCCTCCAATATTACCTTAGGTTCCACATTAACCCCACACAGAAACCCTTCATGGCGCTCACCTTCTGGCCTTTTTGCATTTGGTTTCTACCAGCAAGACGACGGTTTTGCAGTCGGGATATGGCTTGAAAACAAACCCAACATCACAGTTGTTTGGACTTCAAATCGCGATGACCCACTCGTCTCTTCAAA...

CDS

Download CDS FASTA

2301 bp · LXL04_029855|LXL04_029855|OH1004|CDS

ATGGCCTTCATATTACTTATCTTTCTGAGAATCGTCTTCCTTTTAGTCACACAAGTATCTGACGTCACCTCCTCCAATATTACCTTAGGTTCCACATTAACCCCACACAGAAACCCTTCATGGCGCTCACCTTCTGGCCTTTTTGCATTTGGTTTCTACCAGCAAGACGACGGTTTTGCAGTCGGGATATGGCTTGAAAACAAACCCAACATCACAGTTGTTTGGACTTCAAATCGCGATGACCCACTCGTCTCTTCAAA...

Protein

Download Protein FASTA

766 aa · LXL04_029855|LXL04_029855|OH1004|PROTEIN

MAFILLIFLRIVFLLVTQVSDVTSSNITLGSTLTPHRNPSWRSPSGLFAFGFYQQDDGFAVGIWLENKPNITVVWTSNRDDPLVSSNSTIELNRDGWLLLHTNGGKDKNITGQISQATSASILDSGGQKLVRESNITSSFSSSQHYATGKFILKMMPQGYLSAFPIIGSSDDTYSRYWSTDTLSTDTESLYLSPNGSLILVQYNGTRMVVNKPTSSESGMDYEAVIFRATLDWDGNFVFYSHRFTNSSSVMKIEWKALQD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_029855`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_029855

Location Chr06:102161437-102163809 (-)

Description Similar to LECRK1: G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

No hit for this species in the current source table.

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: A0A075F7E9`	Involved in innate immunity.	No verified direct reference in this release
`Os04g0201900`	Involved in innate immunity.	No verified direct reference in this release
`Os04g0202500`	Involved in resistance against the herbivorous insect brown planthopper (N.lugens, BPH).	No verified direct reference in this release
`UniProt: Q25AG3`	Involved in resistance against the herbivorous insect brown planthopper (N.lugens, BPH).	No verified direct reference in this release
`UniProt: A2XQD3`	Involved in resistance against the herbivorous insect brown planthopper (N.lugens, BPH).	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_029855 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0051707 response to other organism Biological Process

GO:0016020 membrane Cellular Component

GO:0004672 protein kinase activity Molecular Function

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0030246 carbohydrate binding Molecular Function

GO:0106310 protein serine kinase activity Molecular Function

KEGG gene cross-reference

dosa:Os04g0201900

dosa:Os04g0202500

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.842

Rank 1 · LXL04_029855 · OH-1004

Endoplasmic reticulum0.087

Rank 2 · LXL04_029855 · OH-1004

Cytoplasm0.072

Rank 3 · LXL04_029855 · OH-1004

Nucleus0.040

Rank 4 · LXL04_029855 · OH-1004

Lysosome / Vacuole0.032

Rank 5 · LXL04_029855 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01453.31B_lectin72-155 aa

PF07714.24PK_Tyr_Ser-Thr486-745 aa

PF00069.32Pkinase487-744 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_029855	`PF01453.31`	B_lectin	72	155	9e-09	36.5
LXL04_029855	`PF07714.24`	PK_Tyr_Ser-Thr	486	745	5.7e-41	141.3
LXL04_029855	`PF00069.32`	Pkinase	487	744	6.8e-36	124.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`A0A075F7E9`	Oryza sativa subsp. indica	G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1	36.128%	Swiss-Prot	moderate database homology
`Q7FAZ3`	Oryza sativa subsp. japonica	G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1	35.802%	Swiss-Prot	moderate database homology
`Q0JEU6`	Oryza sativa subsp. japonica	G-type lectin S-receptor-like serine/threonine-protein kinase LECRK3	34.572%	Swiss-Prot	moderate database homology
`Q25AG3`	Oryza sativa subsp. indica	G-type lectin S-receptor-like serine/threonine-protein kinase LECRK3	34.963%	Swiss-Prot	moderate database homology
`A2XQD3`	Oryza sativa subsp. indica	G-type lectin S-receptor-like serine/threonine-protein kinase LECRK2	33.808%	Swiss-Prot	moderate database homology

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