LXL04_029692 | RubberDandelionOmics

Gene overview

LXL04_029692

Reference: OH-1004 Chr: Chr06 Coordinates: 97215174-97216302 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

636 bp · LXL04_029692|LXL04_029692|OH1004|cDNA

ACACCCCCTACCCCACCTCCCCTTCTCTCCCCTCTTGACTCACCAACTCCTCTTTATAAACCCCACCTCCTCCCTTCGCATTCTCTCCAGCCACGGTCCACCGCCACCGCCCTCCTCCCTCTTTGCGAAGAAATGGAGTCTACAACCACTAGAAGGCCTTATTTTGTTGAAGAAAACAATGGGCTTGCTTCTATCTCCGACATAGAACATGGATTCTCATCATCGCCGTCGACGGAAGACAACCACCGTGGTCAACACCT...

CDS

Download CDS FASTA

504 bp · LXL04_029692|LXL04_029692|OH1004|CDS

ATGGAGTCTACAACCACTAGAAGGCCTTATTTTGTTGAAGAAAACAATGGGCTTGCTTCTATCTCCGACATAGAACATGGATTCTCATCATCGCCGTCGACGGAAGACAACCACCGTGGTCAACACCTGATTTCCAGACCTCTGTATTCGCCGAGAAAAGCAAGTCTGAGAAACCTTTCTTCTTTTTCTTCTGTTTCTTCTCCAAGATCCGGGAGATTTTTGCATGGACGATTTGAAGAACAACAACCTCATTTTTTGGA...

Protein

Download Protein FASTA

167 aa · LXL04_029692|LXL04_029692|OH1004|PROTEIN

MESTTTRRPYFVEENNGLASISDIEHGFSSSPSTEDNHRGQHLISRPLYSPRKASLRNLSSFSSVSSPRSGRFLHGRFEEQQPHFLDACFLCKKPLGPNRDIFMYRGDTPFCSEECRAEQIDIDESKEKSKNLSSSMKALRKKEKSETSPNKSSKKYPFYSGAVVAA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_029692`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_029692

Location Chr06:97215174-97216302 (+)

Description Similar to FLZ2: FCS-Like Zinc finger 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g17670`	May act as an adapter to facilitate the interaction of SnRK1 complex with effector proteins, conferring tissue- and stimulus-type specific differences in the SnRK1 regulation pathway.	No verified direct reference in this release
`At5g47060`	May act as an adapter to facilitate the interaction of SnRK1 complex with effector proteins, conferring tissue- and stimulus-type specific differences in the SnRK1 regulation pathway.	No verified direct reference in this release
`At2g44670`	May act as an adapter to facilitate the interaction of SnRK1 complex with effector proteins, conferring tissue- and stimulus-type specific differences in the SnRK1 regulation pathway.	No verified direct reference in this release
`At1g78020`	May act as an adapter to facilitate the interaction of SnRK1 complex with effector proteins, conferring tissue- and stimulus-type specific differences in the SnRK1 regulation pathway.	FCS-like zinc finger 6 and 10 repress SnRK1 signalling in Arabidopsis.2018 · DOI: 10.1111/tpj.13854
`At1g22160`	May act as an adapter to facilitate the interaction of SnRK1 complex with effector proteins, conferring tissue- and stimulus-type specific differences in the SnRK1 regulation pathway.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_029692 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009646 response to absence of light Biological Process

GO:0009744 response to sucrose Biological Process

GO:0009749 response to glucose Biological Process

GO:0042594 response to starvation Biological Process

GO:0071456 cellular response to hypoxia Biological Process

GO:0090351 seedling development Biological Process

GO:1905582 response to mannose Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005829 cytosol Cellular Component

KEGG gene cross-reference

ath:AT1G22160

ath:AT1G78020

ath:AT2G44670

ath:AT4G17670

ath:AT5G47060

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.578

Rank 1 · LXL04_029692 · OH-1004

Cytoplasm0.450

Rank 2 · LXL04_029692 · OH-1004

Cell membrane0.098

Rank 3 · LXL04_029692 · OH-1004

Endoplasmic reticulum0.041

Rank 4 · LXL04_029692 · OH-1004

Lysosome / Vacuole0.024

Rank 5 · LXL04_029692 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04570.21zf-FLZ78-126 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_029692	`PF04570.21`	zf-FLZ	78	126	1.6e-25	89.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8VZM9`	Arabidopsis thaliana	FCS-Like Zinc finger 2	49.708%	Swiss-Prot	moderate database homology
`Q9FGQ9`	Arabidopsis thaliana	FCS-Like Zinc finger 1	52.809%	Swiss-Prot	strong database homology
`O80506`	Arabidopsis thaliana	FCS-Like Zinc finger 3	50.575%	Swiss-Prot	moderate database homology
`Q9SGZ8`	Arabidopsis thaliana	FCS-Like Zinc finger 6	43.956%	Swiss-Prot	moderate database homology
`Q8VY80`	Arabidopsis thaliana	FCS-Like Zinc finger 5	60.417%	Swiss-Prot	weak database homology

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