LXL04_029681 | RubberDandelionOmics

Gene overview

LXL04_029681

Reference: OH-1004 Chr: Chr06 Coordinates: 96971371-96976401 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1554 bp · LXL04_029681|LXL04_029681|OH1004|cDNA

ATGAAGGAAACCCCAAATCAATCTCAAATCCACCACCGGAATCCACCGCCACCACAAGTTGTGCCGCCAATAATCACCAACAACAGCCAATTTACATCACCACGATCATCCAACGTACAAAATGGCAACCAAATGCTGCCAATGTTTTGGCCAAATTCCGGTGGTCTTCCACCGCCTTTTCCTCATTCTACAACTCTTGCCGCCGGCCAAGAACCAATATATCATCCCAATCAAACAAACAGTTGGGCAATTGGCCTTTA...

CDS

Download CDS FASTA

1554 bp · LXL04_029681|LXL04_029681|OH1004|CDS

ATGAAGGAAACCCCAAATCAATCTCAAATCCACCACCGGAATCCACCGCCACCACAAGTTGTGCCGCCAATAATCACCAACAACAGCCAATTTACATCACCACGATCATCCAACGTACAAAATGGCAACCAAATGCTGCCAATGTTTTGGCCAAATTCCGGTGGTCTTCCACCGCCTTTTCCTCATTCTACAACTCTTGCCGCCGGCCAAGAACCAATATATCATCCCAATCAAACAAACAGTTGGGCAATTGGCCTTTA...

Protein

Download Protein FASTA

517 aa · LXL04_029681|LXL04_029681|OH1004|PROTEIN

MKETPNQSQIHHRNPPPPQVVPPIITNNSQFTSPRSSNVQNGNQMLPMFWPNSGGLPPPFPHSTTLAAGQEPIYHPNQTNSWAIGLYDCFSDFKISVLVLLCPCVAFGKIAEIVNEGETNWTEPGSLYCFLYVVQIGFMEILDMIWVLLFKHKLIGSMGYQGWVIGFILATFYNGLYRTKMRRQWNLKGTLSSDYCLHLWCHQCALCQQYRQLEHQGFIVFQGWDRNKGRYIQATTIHSEAHSFQDSISIHFWRFTHFRF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_029681`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_029681

Location Chr06:96971371-96976401 (-)

Description Similar to SGPP: Haloacid dehalogenase-like hydrolase domain-containing protein Sgpp

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g38740`	May catalyze dephosphorylation of diverse sugar-phosphate substrates.	HAD hydrolase function unveiled by substrate screening: enzymatic characterization of Arabidopsis thaliana subclass I phosphosugar phosphatase AtSgpp.2013 · DOI: 10.1007/s00425-012-1809-5
`At1g14870`	Zinc transporter acting in both zinc extrusion and long-distance zinc transport.	Arabidopsis PCR2 is a zinc exporter involved in both zinc extrusion and long-distance zinc transport.2010 · DOI: 10.1105/tpc.109.070185
`At1g14880`	Involved in glutathione-independent cadmium resistance.	A novel family of cys-rich membrane proteins mediates cadmium resistance in Arabidopsis.2004 · DOI: 10.1104/pp.103.037739
`At5g35525`	May be involved in heavy metals transport.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_029681 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006979 response to oxidative stress Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0003729 mRNA binding Molecular Function

GO:0046872 metal ion binding Molecular Function

GO:0050308 sugar-phosphatase activity Molecular Function

KEGG gene cross-reference

ath:AT1G14870

ath:AT1G14880

ath:AT2G38740

ath:AT5G35525

zma:100284761

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.367

Rank 1 · LXL04_029681 · OH-1004

Endoplasmic reticulum0.211

Rank 2 · LXL04_029681 · OH-1004

Cytoplasm0.192

Rank 3 · LXL04_029681 · OH-1004

Lysosome / Vacuole0.175

Rank 4 · LXL04_029681 · OH-1004

Golgi apparatus0.153

Rank 5 · LXL04_029681 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04749.23PLAC882-212 aa

PF00702.33Hydrolase293-470 aa

PF13419.13HAD_2295-476 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_029681	`PF04749.23`	PLAC8	82	212	1.4e-22	81.2
LXL04_029681	`PF00702.33`	Hydrolase	293	470	9.8e-22	79.0
LXL04_029681	`PF13419.13`	HAD_2	295	476	5.5e-28	98.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9ZVJ5`	Arabidopsis thaliana	Haloacid dehalogenase-like hydrolase domain-containing protein Sgpp	72.766%	Swiss-Prot	weak database homology
`Q9LQU4`	Arabidopsis thaliana	Protein PLANT CADMIUM RESISTANCE 2	31.609%	Swiss-Prot	weak database homology
`Q9LQU2`	Arabidopsis thaliana	Protein PLANT CADMIUM RESISTANCE 1	32.759%	Swiss-Prot	weak database homology
`P0CW97`	Arabidopsis thaliana	Protein PLANT CADMIUM RESISTANCE 3	29.121%	Swiss-Prot	weak database homology

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