LXL04_029679 | RubberDandelionOmics

Gene overview

LXL04_029679

Reference: OH-1004 Chr: Chr06 Coordinates: 96939341-96941651 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

747 bp · LXL04_029679|LXL04_029679|OH1004|cDNA

ATGGTCTTCGTTACCACTTCTGCAATCACACCGGAATACAACCGGAAAGCTGAGCTCACGGCGTTTGACGAAACCAAAACCGGCGTCAAAGGACTTATAGATGCCGGAATAACGGAGGTCCCTCGGATGTTCCTCCTACCTGAACCTGAAAACCTAGACTCCAACCAATCAGAGCTTACCCTTCCGACCATCGATTTCGACGGAATTGATGAAGATCCGGTGCGGCGAAAGGAGGTGATTGCGAAAATGAAGGATGCGTT...

CDS

Download CDS FASTA

747 bp · LXL04_029679|LXL04_029679|OH1004|CDS

ATGGTCTTCGTTACCACTTCTGCAATCACACCGGAATACAACCGGAAAGCTGAGCTCACGGCGTTTGACGAAACCAAAACCGGCGTCAAAGGACTTATAGATGCCGGAATAACGGAGGTCCCTCGGATGTTCCTCCTACCTGAACCTGAAAACCTAGACTCCAACCAATCAGAGCTTACCCTTCCGACCATCGATTTCGACGGAATTGATGAAGATCCGGTGCGGCGAAAGGAGGTGATTGCGAAAATGAAGGATGCGTT...

Protein

Download Protein FASTA

248 aa · LXL04_029679|LXL04_029679|OH1004|PROTEIN

MVFVTTSAITPEYNRKAELTAFDETKTGVKGLIDAGITEVPRMFLLPEPENLDSNQSELTLPTIDFDGIDEDPVRRKEVIAKMKDALESWGFLQMTRIHEFPKHEHGKLMSYSCRVFRVVYKLPGLHRTITDIIREEKSSQRLKTKALFGRSPVAELHSFPSIEDDAIFQAWGGKEKKWKETPCDAMFELCNSGRTWVGSPSSMGADRVDRRTLKTGWYMLRMMKGSCGSNLGSIGVKRKKLANCTKC

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_029679`
TK1151 ID	TkA02G103370
OH-1004 ID	LXL04_029679
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	97.900
Protein coverage (%)	TK1151 84.821 / OH-1004 38.306 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_029679

Location Chr06:96939341-96941651 (-)

Description Similar to ACO3: 1-aminocyclopropane-1-carboxylate oxidase homolog

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g25450`	Necessary for the hydroxylation of but-3-enyl glucosinolate to 2-hydroxybut-3-enyl glucosinolate, which is toxic to insects, bacteria and nematodes, inhibits seed germination and produces bitter flavors.	A novel 2-oxoacid-dependent dioxygenase involved in the formation of the goiterogenic 2-hydroxybut-3-enyl glucosinolate and generalist insect resistance in Arabidopsis,.2008 · DOI: 10.1104/pp.108.129981
`At1g04350`	1-aminocyclopropane-1-carboxylate oxidase homolog 6.	No verified direct reference in this release
`At1g06650`	1-aminocyclopropane-1-carboxylate oxidase homolog 3.	No verified direct reference in this release
`At1g06640`	1-aminocyclopropane-1-carboxylate oxidase homolog 2.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_029679 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0002238 response to molecule of fungal origin Biological Process

GO:0009693 ethylene biosynthetic process Biological Process

GO:0009805 coumarin biosynthetic process Biological Process

GO:0009835 fruit ripening Biological Process

GO:0010439 regulation of glucosinolate biosynthetic process Biological Process

GO:0019761 glucosinolate biosynthetic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0010494 cytoplasmic stress granule Cellular Component

KEGG gene cross-reference

ath:AT1G04350

ath:AT1G06640

ath:AT1G06650

ath:AT2G25450

sly:101268031

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.548

Rank 1 · LXL04_029679 · OH-1004

Cytoplasm0.400

Rank 2 · LXL04_029679 · OH-1004

Mitochondrion0.072

Rank 3 · LXL04_029679 · OH-1004

Cell membrane0.052

Rank 4 · LXL04_029679 · OH-1004

Endoplasmic reticulum0.052

Rank 5 · LXL04_029679 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SKK4`	Arabidopsis thaliana	Probable 2-oxoacid dependent dioxygenase	50.000%	Swiss-Prot	weak database homology
`P93824`	Arabidopsis thaliana	1-aminocyclopropane-1-carboxylate oxidase homolog 6	46.667%	Swiss-Prot	weak database homology
`Q8H1S4`	Arabidopsis thaliana	1-aminocyclopropane-1-carboxylate oxidase homolog 3	46.809%	Swiss-Prot	weak database homology
`Q9C5K7`	Arabidopsis thaliana	1-aminocyclopropane-1-carboxylate oxidase homolog 2	45.361%	Swiss-Prot	weak database homology

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