LXL04_029649 | RubberDandelionOmics

Gene overview

LXL04_029649

Reference: OH-1004 Chr: Chr06 Coordinates: 96202039-96203905 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1635 bp · LXL04_029649|LXL04_029649|OH1004|cDNA

ATGTCAAGATATTCGTTTTCAAAAGATGTTCAGGTTCCGATATGTGGGATACCATATAACTTGGACAGGGATCTTCTTGCTGCAAGATCATCAAAACTGTGCAAGCTGTTCAAAGAAAACCCAGATGAAGATCTCTCTCATCTTGTTTGCAATATCCCCACAACCCCTCAAGTTTTCGAGCTCATGGCAAGATTCTGCTACGGTCTTGAAGTGAAATTTACACCAGAAAACGTCATTCCAATTTCATGTTTAGCTTGCTA...

CDS

Download CDS FASTA

1635 bp · LXL04_029649|LXL04_029649|OH1004|CDS

ATGTCAAGATATTCGTTTTCAAAAGATGTTCAGGTTCCGATATGTGGGATACCATATAACTTGGACAGGGATCTTCTTGCTGCAAGATCATCAAAACTGTGCAAGCTGTTCAAAGAAAACCCAGATGAAGATCTCTCTCATCTTGTTTGCAATATCCCCACAACCCCTCAAGTTTTCGAGCTCATGGCAAGATTCTGCTACGGTCTTGAAGTGAAATTTACACCAGAAAACGTCATTCCAATTTCATGTTTAGCTTGCTA...

Protein

Download Protein FASTA

544 aa · LXL04_029649|LXL04_029649|OH1004|PROTEIN

MSRYSFSKDVQVPICGIPYNLDRDLLAARSSKLCKLFKENPDEDLSHLVCNIPTTPQVFELMARFCYGLEVKFTPENVIPISCLACYLGMTDNHSPNNLLTRALSFFKREIITGWNESIRSLKSTEDNQLLLQQAMKLGLIDACLDSIITKALNNPTHLPVYKQRQLFVVDSEQDQSFLSLTTLGLQFYEPIIHGMIQGKMGSINIASNLYEYAKKWVFSDPKDSDQSSSSSSSSQGVYSNSRRDTIEAIEKLFPNDRAV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_029649`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_029649

Location Chr06:96202039-96203905 (-)

Description Similar to At3g03510: BTB/POZ domain-containing protein At3g03510

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g03510`	May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release
`At5g17580`	May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release
`At3g50840`	May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release
`At5g66560`	May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release
`At5g13600`	May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_029649 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0016567 protein ubiquitination Biological Process

GO:0005634 nucleus Cellular Component

GO:0009507 chloroplast Cellular Component

KEGG gene cross-reference

ath:AT3G03510

ath:AT3G50840

ath:AT5G13600

ath:AT5G17580

ath:AT5G66560

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.422

Rank 1 · LXL04_029649 · OH-1004

Cytoplasm0.418

Rank 2 · LXL04_029649 · OH-1004

Cell membrane0.173

Rank 3 · LXL04_029649 · OH-1004

Endoplasmic reticulum0.061

Rank 4 · LXL04_029649 · OH-1004

Plastid0.051

Rank 5 · LXL04_029649 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03000.20NPH3180-420 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_029649	`PF03000.20`	NPH3	180	420	2.9e-65	221.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SRQ5`	Arabidopsis thaliana	BTB/POZ domain-containing protein At3g03510	36.612%	Swiss-Prot	moderate database homology
`Q9LF66`	Arabidopsis thaliana	BTB/POZ domain-containing protein At5g17580	36.042%	Swiss-Prot	moderate database homology
`Q8LPQ3`	Arabidopsis thaliana	BTB/POZ domain-containing protein At3g50840	33.816%	Swiss-Prot	moderate database homology
`Q94A73`	Arabidopsis thaliana	BTB/POZ domain-containing protein At5g66560	33.455%	Swiss-Prot	moderate database homology
`Q9FNB3`	Arabidopsis thaliana	Putative BTB/POZ domain-containing protein At5g13600	33.396%	Swiss-Prot	moderate database homology

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