Gene Card
Gene overview
cDNA / CDS / Protein Sequences
735 bp · LXL04_029638|LXL04_029638|OH1004|cDNA
ATGCTATTTCAACTCACACTCGAACAACAATACTCACCATCAACACTAAACATGACGCCTGCTAAAATCTCCATAGCAGTCCCATTTACTCTTCTTTCgatcttcttcttctcattCACTCAAGGAGCCAACTTCGATGTCATAAACCAATGCCCATACACAGTTTGGGCCGCCGCCTCACCTGGCGGAGGTATCCAACTTGAAACCGGTCAAACCTGGTCAATCACAGTCGCACCAGGAACAGCAGGTGCTCGTATCTG...
735 bp · LXL04_029638|LXL04_029638|OH1004|CDS
ATGCTATTTCAACTCACACTCGAACAACAATACTCACCATCAACACTAAACATGACGCCTGCTAAAATCTCCATAGCAGTCCCATTTACTCTTCTTTCGATCTTCTTCTTCTCATTCACTCAAGGAGCCAACTTCGATGTCATAAACCAATGCCCATACACAGTTTGGGCCGCCGCCTCACCTGGCGGAGGTATCCAACTTGAAACCGGTCAAACCTGGTCAATCACAGTCGCACCAGGAACAGCAGGTGCTCGTATCTG...
Protein
Download Protein FASTA244 aa · LXL04_029638|LXL04_029638|OH1004|PROTEIN
MLFQLTLEQQYSPSTLNMTPAKISIAVPFTLLSIFFFSFTQGANFDVINQCPYTVWAAASPGGGIQLETGQTWSITVAPGTAGARIWGRTGCTFDSNGNGKCDTGDCNGLLECQGYGSPPNTLAEFALNQDSNNDFVDISVVDGFNIPLEFSPVDASCKTMTCNADINGECPDPLKTQGGCNNPCTVFNTVEYCCTIERGSCGPTDYSKFFKERCPDAYSYPQDDPTSLFTCPGGTNYKVVFCP
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_029638 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_029638 | ||||||
|---|---|---|---|---|---|---|---|
| Location | Chr06:96119145-96119879 (-) | ||||||
| Description | Similar to Thaumatin-like protein | ||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | ||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||
| GO annotations (OH1004 source) | GO:0006952 defense response Biological Process GO:0050832 defense response to fungus Biological Process GO:0005576 extracellular region Cellular Component GO:0005773 vacuole Cellular Component GO:0099503 secretory vesicle Cellular Component GO:0016787 hydrolase activity Molecular Function GO:0016798 hydrolase activity, acting on glycosyl bonds Molecular Function | ||||||
| KEGG gene cross-reference | ath:AT4G11650 nta:107769943 nta:107776518 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00314.23Thaumatin49-244 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_029638 | PF00314.23 | Thaumatin | 49 | 244 | 6.9e-63 | 212.8 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
| Protein | Organism | Description | Identity | Database | Confidence |
|---|---|---|---|---|---|
P50700 | Arabidopsis thaliana | Osmotin-like protein OSM34 | 62.727% | Swiss-Prot | strong database homology |