LXL04_029591 | RubberDandelionOmics

Gene overview

LXL04_029591

Reference: OH-1004 Chr: Chr06 Coordinates: 94927450-94930586 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1524 bp · LXL04_029591|LXL04_029591|OH1004|cDNA

ATGTTTCTTTATACCAGGCTCTTTTTCTCCATTATGCCATCAGCTGCGACCGTTAGACGATCAATGACGAGCATATCGAGTTCAATGTCAATCAAGCACGGGATTTCACTTTGGTGTCCTCAATCTCCATCTCTCAGTCGTCAGCATTCTGGTGTGGTTTATTCAAGAAGCTTCCACCGGAGAAACTTCGTCGTTTCTGCGTCATCCTCTTTTGCTAATGAGAATCGAGAATTTGTGATAGTCGGAGGGGGAAATGCTGC...

CDS

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1524 bp · LXL04_029591|LXL04_029591|OH1004|CDS

ATGTTTCTTTATACCAGGCTCTTTTTCTCCATTATGCCATCAGCTGCGACCGTTAGACGATCAATGACGAGCATATCGAGTTCAATGTCAATCAAGCACGGGATTTCACTTTGGTGTCCTCAATCTCCATCTCTCAGTCGTCAGCATTCTGGTGTGGTTTATTCAAGAAGCTTCCACCGGAGAAACTTCGTCGTTTCTGCGTCATCCTCTTTTGCTAATGAGAATCGAGAATTTGTGATAGTCGGAGGGGGAAATGCTGC...

Protein

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507 aa · LXL04_029591|LXL04_029591|OH1004|PROTEIN

MFLYTRLFFSIMPSAATVRRSMTSISSSMSIKHGISLWCPQSPSLSRQHSGVVYSRSFHRRNFVVSASSSFANENREFVIVGGGNAAGYAARTFVEHGMADGKLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPDWYKEKGIEMIYEDPVTAIDAKKQTLTTNSGKTLKYGSLIVATGCTASRFPEKIGGNLHGVHYIRDVADADSLISSLGKAQKVVVVGGGYIGMEVAAATVAWNLDTTVI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_029591`
TK1151 ID	TkAUNG070520
OH-1004 ID	LXL04_029591
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	99.600
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_029591

Location Chr06:94927450-94930586 (-)

Description Similar to MDAR5: Monodehydroascorbate reductase, chloroplastic/mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g63940`	Catalyzes the conversion of monodehydroascorbate (MDA) to ascorbate, oxidizing NADH in the process.	Monodehydroascorbate reductase mediates TNT toxicity in plants.2015 · DOI: 10.1126/science.aab3472

Rice

Reference gene ID	Possible function	Papers / DOI
`Os08g0151800`	Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.	No verified direct reference in this release
`Os08g0557600`	Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_029591 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009409 response to cold Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0010319 stromule Cellular Component

GO:0005524 ATP binding Molecular Function

GO:0016651 oxidoreductase activity, acting on NAD(P)H Molecular Function

GO:0016656 monodehydroascorbate reductase (NADH) activity Molecular Function

KEGG gene cross-reference

ath:AT1G63940

dosa:Os08g0151800

dosa:Os08g0557600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.548

Rank 1 · LXL04_029591 · OH-1004

Plastid0.488

Rank 2 · LXL04_029591 · OH-1004

Cytoplasm0.104

Rank 3 · LXL04_029591 · OH-1004

Nucleus0.045

Rank 4 · LXL04_029591 · OH-1004

Peroxisome0.031

Rank 5 · LXL04_029591 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07992.21Pyr_redox_278-391 aa

PF13738.13Pyr_redox_3157-366 aa

PF00070.34Pyr_redox233-313 aa

PF21791.4MDHAR3-like_C410-490 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_029591	`PF07992.21`	Pyr_redox_2	78	391	4.1e-55	188.0
LXL04_029591	`PF13738.13`	Pyr_redox_3	157	366	5.8e-11	42.9
LXL04_029591	`PF00070.34`	Pyr_redox	233	313	1e-19	71.6
LXL04_029591	`PF21791.4`	MDHAR3-like_C	410	490	1.8e-19	70.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P92947`	Arabidopsis thaliana	Monodehydroascorbate reductase, chloroplastic/mitochondrial	75.960%	Swiss-Prot	strong database homology
`Q84PW3`	Oryza sativa subsp. japonica	Monodehydroascorbate reductase 5, chlorplastic	75.831%	Swiss-Prot	strong database homology
`Q6ZJ08`	Oryza sativa subsp. japonica	Monodehydroascorbate reductase 4, cytosolic	46.588%	Swiss-Prot	moderate database homology

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