LXL04_029538 | RubberDandelionOmics

Gene overview

LXL04_029538

Reference: OH-1004 Chr: Chr06 Coordinates: 93431867-93433281 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

978 bp · LXL04_029538|LXL04_029538|OH1004|cDNA

ATGGAAAATGCTTACATCATCAATGAGCTTACTCAAGGGATGGAACTAGCTAGACAGCTAAAAGCTATTCTCAGCTCAAATTGTTCCCCTGAATCAAAACATAATTTGATTCAAGGGATCATAACTTCTTACAACAGAGCGCTGTTGATTATCAACAGCGCTCAAGCTGAGTTTCCAGCACTGGTGGTGGCACAACCACCGCCAGTGCTTAGCCAACCTGAGTCACCGGTTTCTATCGAGGGAAGCCCACAAAGCGGGGA...

CDS

Download CDS FASTA

978 bp · LXL04_029538|LXL04_029538|OH1004|CDS

ATGGAAAATGCTTACATCATCAATGAGCTTACTCAAGGGATGGAACTAGCTAGACAGCTAAAAGCTATTCTCAGCTCAAATTGTTCCCCTGAATCAAAACATAATTTGATTCAAGGGATCATAACTTCTTACAACAGAGCGCTGTTGATTATCAACAGCGCTCAAGCTGAGTTTCCAGCACTGGTGGTGGCACAACCACCGCCAGTGCTTAGCCAACCTGAGTCACCGGTTTCTATCGAGGGAAGCCCACAAAGCGGGGA...

Protein

Download Protein FASTA

325 aa · LXL04_029538|LXL04_029538|OH1004|PROTEIN

MENAYIINELTQGMELARQLKAILSSNCSPESKHNLIQGIITSYNRALLIINSAQAEFPALVVAQPPPVLSQPESPVSIEGSPQSGDFNQGLDNSQDQRVVSKKRKTMLTWKNQIRISTDNGLEGNTDDGYSWRKYGQKDILGAKFPRSYYRCTYRYVHNCMARKQVQRTDEDPTVFEITYRGQHTCNNSTSTATTTTTHPVVPPQSPEPHHNHQPKSTDMLSNLRENLTISTSNLDAMVPCSFSFPSSSSGCLENYQQF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_029538`
TK1151 ID	TkA02G261560
OH-1004 ID	LXL04_029538
Relationship / confidence	Rbh High Identity Coverage Local Synteny Minor Chr Pair / Probable
Protein identity (%)	98.500
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_029538

Location Chr06:93431867-93433281 (+)

Description Similar to WRKY41: Probable WRKY transcription factor 41

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g11070`	Transcription factor.	No verified direct reference in this release
`At4g23810`	Transcription factor.	The antagonist function of Arabidopsis WRKY53 and ESR/ESP in leaf senescence is modulated by the jasmonic and salicylic acid equilibrium.2007 · DOI: 10.1105/tpc.106.042705 A HECT E3 ubiquitin ligase negatively regulates Arabidopsis leaf senescence through degradation of the transcription factor WRKY53.2010 · DOI: 10.1111/j.1365-313x.2010.04233.x Arabidopsis WRKY46 coordinates with WRKY70 and WRKY53 in basal resistance against pathogen Pseudomonas syringae.2012 · DOI: 10.1016/j.plantsci.2011.12.003
`At5g24110`	Transcription factor.	No verified direct reference in this release
`At2g46400`	Transcription factor involved in the regulation of osmotic stress responses and stomatal movement.	EDS1 contributes to nonhost resistance of Arabidopsis thaliana against Erwinia amylovora.2012 · DOI: 10.1094/mpmi-05-11-0111 Arabidopsis WRKY46 coordinates with WRKY70 and WRKY53 in basal resistance against pathogen Pseudomonas syringae.2012 · DOI: 10.1016/j.plantsci.2011.12.003 Transcription factor WRKY46 regulates osmotic stress responses and stomatal movement independently in Arabidopsis.2014 · DOI: 10.1111/tpj.12538 Arabidopsis WRKY46, WRKY54, and WRKY70 Transcription Factors Are Involved in Brassinosteroid-Regulated Plant Growth and Drought Responses.2017 · DOI: 10.1105/tpc.17.00364

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0571200`	May play a role in defense responses.	The bHLH Rac Immunity1 (RAI1) Is Activated by OsRac1 via OsMAPK3 and OsMAPK6 in Rice Immunity.2012 · DOI: 10.1093/pcp/pcs033

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_029538 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0006952 defense response Biological Process

GO:0009409 response to cold Biological Process

GO:0009617 response to bacterium Biological Process

GO:0009742 brassinosteroid mediated signaling pathway Biological Process

GO:0009751 response to salicylic acid Biological Process

GO:0010150 leaf senescence Biological Process

GO:0010193 response to ozone Biological Process

GO:0031347 regulation of defense response Biological Process

GO:0033198 response to ATP Biological Process

GO:0042542 response to hydrogen peroxide Biological Process

KEGG gene cross-reference

ath:AT2G46400

ath:AT4G11070

ath:AT4G23810

ath:AT5G24110

dosa:Os05g0571200

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.952

Rank 1 · LXL04_029538 · OH-1004

Cytoplasm0.185

Rank 2 · LXL04_029538 · OH-1004

Cell membrane0.018

Rank 3 · LXL04_029538 · OH-1004

Mitochondrion0.014

Rank 4 · LXL04_029538 · OH-1004

Endoplasmic reticulum0.011

Rank 5 · LXL04_029538 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03106.22WRKY128-188 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_029538	`PF03106.22`	WRKY	128	188	1.5e-27	96.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8H0Y8`	Arabidopsis thaliana	Probable WRKY transcription factor 41	38.416%	Swiss-Prot	moderate database homology
`Q9SUP6`	Arabidopsis thaliana	Probable WRKY transcription factor 53	40.956%	Swiss-Prot	moderate database homology
`Q9FL62`	Arabidopsis thaliana	Probable WRKY transcription factor 30	34.661%	Swiss-Prot	moderate database homology
`Q9SKD9`	Arabidopsis thaliana	Probable WRKY transcription factor 46	39.196%	Swiss-Prot	moderate database homology
`Q0DFT7`	Oryza sativa subsp. japonica	Transcription factor WRKY19	34.392%	Swiss-Prot	moderate database homology

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