LXL04_029501 | RubberDandelionOmics

Gene overview

LXL04_029501

Reference: OH-1004 Chr: Chr06 Coordinates: 92454573-92459502 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2361 bp · LXL04_029501|LXL04_029501|OH1004|cDNA

ATGAAGAAAATTTGGGGCTTCTTGACTAAGGATTTTACAGAAACAACTGATGATCACGTGTCTGAAACCCTCAAAATCTTGAGGATAATGTATGCTTCTCCAAAGTTGATGGAACATGTGGTTTTTCAAAGTGCATTTATAATGTCAACAATCACTCCTCTCCCGGCAACCGCCGCCGCTCCACCGCTGCACACCTCCCACCTCCTGCGCCGCACCACCTTTAACCGCGCATTCGCCATTATTTACGCATCCGCCATCTT...

CDS

Download CDS FASTA

2361 bp · LXL04_029501|LXL04_029501|OH1004|CDS

ATGAAGAAAATTTGGGGCTTCTTGACTAAGGATTTTACAGAAACAACTGATGATCACGTGTCTGAAACCCTCAAAATCTTGAGGATAATGTATGCTTCTCCAAAGTTGATGGAACATGTGGTTTTTCAAAGTGCATTTATAATGTCAACAATCACTCCTCTCCCGGCAACCGCCGCCGCTCCACCGCTGCACACCTCCCACCTCCTGCGCCGCACCACCTTTAACCGCGCATTCGCCATTATTTACGCATCCGCCATCTT...

Protein

Download Protein FASTA

786 aa · LXL04_029501|LXL04_029501|OH1004|PROTEIN

MKKIWGFLTKDFTETTDDHVSETLKILRIMYASPKLMEHVVFQSAFIMSTITPLPATAAAPPLHTSHLLRRTTFNRAFAIIYASAILALLYYHLRTLRHATTFISSAATATFLLADIVLAFMWTTTTSFRLFPIDRKVFPENLEKVLEKKDFPALDIFICTADPYKEPPMNVVNTALSLMGYDYPPEKISVYVSDDGGSELTLFAFFEAAKFAKIWLPFCRDNNIMDRCPEVFFRSNAITFPDGANVKAIYEAMKIKVES...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_029501`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_029501

Location Chr06:92454573-92459502 (-)

Description Similar to CSLG3: Cellulose synthase-like protein G3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g23990`	Thought to be a Golgi-localized beta-glycan synthase that polymerize the backbones of noncellulosic polysaccharides (hemicelluloses) of plant cell wall.	No verified direct reference in this release
`At4g24000`	Thought to be a Golgi-localized beta-glycan synthase that polymerize the backbones of noncellulosic polysaccharides (hemicelluloses) of plant cell wall.	No verified direct reference in this release
`At4g24010`	Thought to be a Golgi-localized beta-glycan synthase that polymerize the backbones of noncellulosic polysaccharides (hemicelluloses) of plant cell wall.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: Q651X6`	Thought to be a Golgi-localized beta-glycan synthase that polymerize the backbones of noncellulosic polysaccharides (hemicelluloses) of plant cell wall.	No verified direct reference in this release
`Os09g0478100`	Thought to be a Golgi-localized beta-glycan synthase that polymerize the backbones of noncellulosic polysaccharides (hemicelluloses) of plant cell wall.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_029501 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009833 plant-type primary cell wall biogenesis Biological Process

GO:0030244 cellulose biosynthetic process Biological Process

GO:0071555 cell wall organization Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0016759 cellulose synthase activity Molecular Function

GO:0016760 cellulose synthase (UDP-forming) activity Molecular Function

KEGG gene cross-reference

ath:AT4G23990

ath:AT4G24000

ath:AT4G24010

dosa:Os09g0478100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.451

Rank 1 · LXL04_029501 · OH-1004

Endoplasmic reticulum0.271

Rank 2 · LXL04_029501 · OH-1004

Golgi apparatus0.167

Rank 3 · LXL04_029501 · OH-1004

Cytoplasm0.109

Rank 4 · LXL04_029501 · OH-1004

Lysosome / Vacuole0.107

Rank 5 · LXL04_029501 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03552.21Cellulose_synt155-439 aa

PF03552.21Cellulose_synt462-779 aa

PF13632.13Glyco_trans_2_3487-617 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_029501	`PF03552.21`	Cellulose_synt	155	439	4.5e-129	432.8
LXL04_029501	`PF03552.21`	Cellulose_synt	462	779	4.5e-129	432.8
LXL04_029501	`PF13632.13`	Glyco_trans_2_3	487	617	3.1e-06	27.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q0WVN5`	Arabidopsis thaliana	Cellulose synthase-like protein G3	54.114%	Swiss-Prot	strong database homology
`Q8VYR4`	Arabidopsis thaliana	Cellulose synthase-like protein G2	53.177%	Swiss-Prot	strong database homology
`Q570S7`	Arabidopsis thaliana	Cellulose synthase-like protein G1	54.119%	Swiss-Prot	strong database homology
`Q651X6`	Oryza sativa subsp. japonica	Cellulose synthase-like protein E6	36.820%	Swiss-Prot	moderate database homology
`Q651X7`	Oryza sativa subsp. japonica	Cellulose synthase-like protein E1	36.376%	Swiss-Prot	moderate database homology

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