LXL04_029479 | RubberDandelionOmics

Gene overview

LXL04_029479

Reference: OH-1004 Chr: Chr06 Coordinates: 91787935-91790915 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1986 bp · LXL04_029479|LXL04_029479|OH1004|cDNA

ATGGGTCGCTCCGGCATCGTGCTAGCGATCGTCTTAATCGGTTGCATTTTTGCAATTTCAACTGCAAAAGAAGAAGCGAACAAGTTAGGAACTGTTATAGGAATAGATCTTGGAACTACCTACTCATGTGTCGGTGTTTACAAGAATGGGCATGTTGAAATCATAGCCAATGACCAAGGAAACCGTATCACTCCATCATGGGTGGCTTTCACAGACTCCGAGAGGTTGATCGGTGAAGCTGCAAAGAATCAGGCCCCTTT...

CDS

Download CDS FASTA

1986 bp · LXL04_029479|LXL04_029479|OH1004|CDS

ATGGGTCGCTCCGGCATCGTGCTAGCGATCGTCTTAATCGGTTGCATTTTTGCAATTTCAACTGCAAAAGAAGAAGCGAACAAGTTAGGAACTGTTATAGGAATAGATCTTGGAACTACCTACTCATGTGTCGGTGTTTACAAGAATGGGCATGTTGAAATCATAGCCAATGACCAAGGAAACCGTATCACTCCATCATGGGTGGCTTTCACAGACTCCGAGAGGTTGATCGGTGAAGCTGCAAAGAATCAGGCCCCTTT...

Protein

Download Protein FASTA

661 aa · LXL04_029479|LXL04_029479|OH1004|PROTEIN

MGRSGIVLAIVLIGCIFAISTAKEEANKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAPLNAERTIFDVKRLIGRKFEDKEVQRDMKLVPYKLVNKDGKPYIQVKLSGGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGVIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLATNGDTHLGGEDFD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_029479`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_029479

Location Chr06:91787935-91790915 (+)

Description Similar to BIP5: Luminal-binding protein 5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g42020`	In cooperation with other chaperones, Hsp70s are key components that facilitate folding of de novo synthesized proteins, assist translocation of precursor proteins into organelles, and are responsible for degradation of damaged protein under stress conditions (Probable).	Multiple BiP genes of Arabidopsis thaliana are required for male gametogenesis and pollen competitiveness.2014 · DOI: 10.1093/pcp/pcu018 Fertilization-Coupled Sperm Nuclear Fusion Is Required for Normal Endosperm Nuclear Proliferation.2020 · DOI: 10.1093/pcp/pcz158
`At5g28540`	In cooperation with other chaperones, Hsp70s are key components that facilitate folding of de novo synthesized proteins, assist translocation of precursor proteins into organelles, and are responsible for degradation of damaged protein under stress conditions (Probable).	Multiple BiP genes of Arabidopsis thaliana are required for male gametogenesis and pollen competitiveness.2014 · DOI: 10.1093/pcp/pcu018 The THERMOSENSITIVE MALE STERILE 1 Interacts with the BiPs via DnaJ Domain and Stimulates Their ATPase Enzyme Activities in Arabidopsis.2015 · DOI: 10.1371/journal.pone.0132500 Fertilization-Coupled Sperm Nuclear Fusion Is Required for Normal Endosperm Nuclear Proliferation.2020 · DOI: 10.1093/pcp/pcz158

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_029479 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006457 protein folding Biological Process

GO:0009408 response to heat Biological Process

GO:0009860 pollen tube growth Biological Process

GO:0030968 endoplasmic reticulum unfolded protein response Biological Process

GO:0034976 response to endoplasmic reticulum stress Biological Process

GO:0036503 ERAD pathway Biological Process

GO:0042026 protein refolding Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0005737 cytoplasm Cellular Component

KEGG gene cross-reference

ath:AT5G28540

ath:AT5G42020

nta:107771425

nta:107818867

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.808

Rank 1 · LXL04_029479 · OH-1004

Cytoplasm0.164

Rank 2 · LXL04_029479 · OH-1004

Extracellular0.075

Rank 3 · LXL04_029479 · OH-1004

Cell membrane0.073

Rank 4 · LXL04_029479 · OH-1004

Golgi apparatus0.069

Rank 5 · LXL04_029479 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00012.27HSP7032-639 aa

PF06723.20MreB_Mbl149-399 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_029479	`PF00012.27`	HSP70	32	639	3.2e-263	875.1
LXL04_029479	`PF06723.20`	MreB_Mbl	149	399	8.2e-17	61.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q39043`	Arabidopsis thaliana	Heat shock 70 kDa protein BIP2	91.515%	Swiss-Prot	strong database homology
`Q9LKR3`	Arabidopsis thaliana	Heat shock 70 kDa protein BIP1	92.633%	Swiss-Prot	strong database homology

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