LXL04_029460 | RubberDandelionOmics

Gene overview

LXL04_029460

Reference: OH-1004 Chr: Chr06 Coordinates: 91274445-91275639 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

522 bp · LXL04_029460|LXL04_029460|OH1004|cDNA

ATGGAGGATTGGCCATTGCTGCTGGCACCAAAGATGGATCAGAacaatggggttatgttcaaTTTCGTTGAGGATAAAGAGTTATTGGTGAAAACCGATGAAGAAGCTGGACGAATTGCTTTGGGAGATACTTGGATCTCACCAGAAGATTTTGTGGTTTCATGGGGTCCTCTTCTAAGAGATCTTTCAAGGATCAACAACAGTGGTTTCAAGAAATCAGAGAGTCTAGTTGAAACGATAAAGCAGCAAATAGCAAATGG...

CDS

Download CDS FASTA

522 bp · LXL04_029460|LXL04_029460|OH1004|CDS

ATGGAGGATTGGCCATTGCTGCTGGCACCAAAGATGGATCAGAACAATGGGGTTATGTTCAATTTCGTTGAGGATAAAGAGTTATTGGTGAAAACCGATGAAGAAGCTGGACGAATTGCTTTGGGAGATACTTGGATCTCACCAGAAGATTTTGTGGTTTCATGGGGTCCTCTTCTAAGAGATCTTTCAAGGATCAACAACAGTGGTTTCAAGAAATCAGAGAGTCTAGTTGAAACGATAAAGCAGCAAATAGCAAATGG...

Protein

Download Protein FASTA

173 aa · LXL04_029460|LXL04_029460|OH1004|PROTEIN

MEDWPLLLAPKMDQNNGVMFNFVEDKELLVKTDEEAGRIALGDTWISPEDFVVSWGPLLRDLSRINNSGFKKSESLVETIKQQIANGEMKEATKSWGDLEEVIMTSSNDVDFYNFLMDSVENNVSSTAGGAILSRKMATKRYSRIQTYFSRYSPSTQFFRPQFPRIQTYPEPC

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_029460`
TK1151 ID	TkA07G046820
OH-1004 ID	LXL04_029460
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	98.800
Protein coverage (%)	TK1151 100.000 / OH-1004 98.266 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_029460

Location Chr06:91274445-91275639 (+)

Description Similar to SCPL51: Serine carboxypeptidase-like 51

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g27920`	Probable carboxypeptidase.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_029460 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0042573 retinoic acid metabolic process Biological Process

GO:0045776 negative regulation of blood pressure Biological Process

GO:0097746 blood vessel diameter maintenance Biological Process

GO:0005576 extracellular region Cellular Component

GO:0048471 perinuclear region of cytoplasm Cellular Component

GO:0070062 extracellular exosome Cellular Component

GO:0004185 serine-type carboxypeptidase activity Molecular Function

KEGG gene cross-reference

ath:AT2G27920

hsa:59342

mmu:74617

rno:114861

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.389

Rank 1 · LXL04_029460 · OH-1004

Cytoplasm0.361

Rank 2 · LXL04_029460 · OH-1004

Plastid0.124

Rank 3 · LXL04_029460 · OH-1004

Mitochondrion0.110

Rank 4 · LXL04_029460 · OH-1004

Cell membrane0.086

Rank 5 · LXL04_029460 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q67Y83`	Arabidopsis thaliana	Serine carboxypeptidase-like 51	57.143%	Swiss-Prot	moderate database homology

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