Gene Card
Gene overview
cDNA / CDS / Protein Sequences
891 bp · LXL04_029374|LXL04_029374|OH1004|cDNA
ATGGTGAGACCATATGCAGTTAAAGGGCGTAAGAGGAAGAAGAACAAAACCGAAAGGTACGAtaaagaagaagaggaggaagaaaatgTGGGGTTcgttgaagaagaagaagaagaagaggaagaaggGGGAAAAGAGGGAACCCAGAAGAAACTGAAGAGTGAAGCTACTGAATCAGATGAAGAGAAAGCAGAAGCAGCCGCGGAAGAACTTGCAGGCATTCCGGTGAACTTAATCGAGCAACAGGGCAACGACAAGAA...
891 bp · LXL04_029374|LXL04_029374|OH1004|CDS
ATGGTGAGACCATATGCAGTTAAAGGGCGTAAGAGGAAGAAGAACAAAACCGAAAGGTACGATAAAGAAGAAGAGGAGGAAGAAAATGTGGGGTTCGTTGAAGAAGAAGAAGAAGAAGAGGAAGAAGGGGGAAAAGAGGGAACCCAGAAGAAACTGAAGAGTGAAGCTACTGAATCAGATGAAGAGAAAGCAGAAGCAGCCGCGGAAGAACTTGCAGGCATTCCGGTGAACTTAATCGAGCAACAGGGCAACGACAAGAA...
Protein
Download Protein FASTA296 aa · LXL04_029374|LXL04_029374|OH1004|PROTEIN
MVRPYAVKGRKRKKNKTERYDKEEEEEENVGFVEEEEEEEEEGGKEGTQKKLKSEATESDEEKAEAAAEELAGIPVNLIEQQGNDKNGPGVIFILEKASLEVAKVGKSYQLLNSEDHANFLRKNKRNPADYRPDISHQAILNILDSPLNKAGKLRALYVRTEKNVLFEIKPHVRIPRTFKRFAGIILQLLQKLSISAVGKREKLLRVIKNPVTQYLPVNSRKIGFSHSSDKLVDMHDYVATLDNDATLVFVVGAMAHGKI...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_029374 |
|---|---|
| TK1151 ID | TkA07G307980 |
| OH-1004 ID | LXL04_029374 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 99.700 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_029374 |
|---|---|
| Location | Chr06:88622524-88623984 (+) |
| Description | Similar to Emg1: Ribosomal RNA small subunit methyltransferase NEP1 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006364 rRNA processing Biological Process GO:0017126 nucleologenesis Biological Process GO:0019236 response to pheromone Biological Process GO:0030490 maturation of SSU-rRNA Biological Process GO:0031167 rRNA methylation Biological Process GO:0042274 ribosomal small subunit biogenesis Biological Process GO:0042742 defense response to bacterium Biological Process GO:0070475 rRNA base methylation Biological Process GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0005694 chromosome Cellular Component GO:0005730 nucleolus Cellular Component |
| KEGG gene cross-reference | dme:Dmel_CG3527 hsa:10436 mmu:14791 spo:2542139 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF03587.20EMG193-290 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_029374 | PF03587.20 | EMG1 | 93 | 290 | 1.9e-68 | 230.5 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.