LXL04_029344 | RubberDandelionOmics

Gene overview

LXL04_029344

Reference: OH-1004 Chr: Chr06 Coordinates: 87983277-87984341 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

760 bp · LXL04_029344|LXL04_029344|OH1004|cDNA

ATGGGTTCAGTTCATCAACCACGGATGTTTTTCTTCATCATTAGTACTATCACGATCGTCTTATCCGAGTCTGTAAACCGAAGTGGAGCTATGTACCATGGCTATGTACCGAGTCCATGGACCCACGCCCATGCGACATTTTATGGAAATGAGAGTGCATCTGAAACCATGGGAGGTGCTTGTGGTTATGGAAACTTGATTACTAATGGATATGGGACAGATACAGCTGCATTGAGCTCAACGATCTTTAGCGACGGATA...

CDS

Download CDS FASTA

687 bp · LXL04_029344|LXL04_029344|OH1004|CDS

ATGGGTTCAGTTCATCAACCACGGATGTTTTTCTTCATCATTAGTACTATCACGATCGTCTTATCCGAGTCTGTAAACCGAAGTGGAGCTATGTACCATGGCTATGTACCGAGTCCATGGACCCACGCCCATGCGACATTTTATGGAAATGAGAGTGCATCTGAAACCATGGGAGGTGCTTGTGGTTATGGAAACTTGATTACTAATGGATATGGGACAGATACAGCTGCATTGAGCTCAACGATCTTTAGCGACGGATA...

Protein

Download Protein FASTA

228 aa · LXL04_029344|LXL04_029344|OH1004|PROTEIN

MGSVHQPRMFFFIISTITIVLSESVNRSGAMYHGYVPSPWTHAHATFYGNESASETMGGACGYGNLITNGYGTDTAALSSTIFSDGYACGQCYQIRTHFDMAKPAFMKIAQWKAGIVPIMYRRVPCNAIRKGGIKFSFQGNGYWLLVYVMNVAGAGDIKQMWVKGTKNGWISMSHNWGASYQAFATLKGQALSFRLTSYTTKQTITAYNVAPANWNLGLTYQGNVNFH

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_029344`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_029344

Location Chr06:87983277-87984341 (+)

Description Similar to EXPA7: Expansin-A7

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g12560`	Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans.	No verified direct reference in this release
`At1g62980`	Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans.	No verified direct reference in this release
`At2g39700`	Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os10g0535900`	May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans.	No verified direct reference in this release
`Os05g0477600`	Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans.	Regulation of expansin gene expression affects growth and development in transgenic rice plants.2003 · DOI: 10.1105/tpc.011965

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_029344 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006949 syncytium formation Biological Process

GO:0009826 unidimensional cell growth Biological Process

GO:0009828 plant-type cell wall loosening Biological Process

GO:0048767 root hair elongation Biological Process

GO:0071669 plant-type cell wall organization or biogenesis Biological Process

GO:0005576 extracellular region Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0016020 membrane Cellular Component

KEGG gene cross-reference

ath:AT1G12560

ath:AT1G62980

ath:AT2G39700

dosa:Os05g0477600

osa:107277540

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.538

Rank 1 · LXL04_029344 · OH-1004

Cytoplasm0.177

Rank 2 · LXL04_029344 · OH-1004

Lysosome / Vacuole0.133

Rank 3 · LXL04_029344 · OH-1004

Endoplasmic reticulum0.089

Rank 4 · LXL04_029344 · OH-1004

Nucleus0.065

Rank 5 · LXL04_029344 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29515.1Expansin_N49-96 aa

PF03330.25DPBB_196-121 aa

PF01357.28Expansin_C134-212 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_029344	`PF29515.1`	Expansin_N	49	96	4.2e-08	34.1
LXL04_029344	`PF03330.25`	DPBB_1	96	121	2.5e-10	41.2
LXL04_029344	`PF01357.28`	Expansin_C	134	212	6.3e-27	94.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LN94`	Arabidopsis thaliana	Expansin-A7	55.426%	Swiss-Prot	strong database homology
`Q9LQ07`	Arabidopsis thaliana	Expansin-A18	55.983%	Swiss-Prot	strong database homology
`O48818`	Arabidopsis thaliana	Expansin-A4	43.254%	Swiss-Prot	moderate database homology
`Q8W2X8`	Oryza sativa subsp. japonica	Putative expansin-A30	58.874%	Swiss-Prot	strong database homology
`Q0DHB7`	Oryza sativa subsp. japonica	Expansin-A4	43.775%	Swiss-Prot	moderate database homology

JBrowse

View in Genome Browser

Gene Card