LXL04_029329 | RubberDandelionOmics

Gene overview

LXL04_029329

Reference: OH-1004 Chr: Chr06 Coordinates: 87694990-87696477 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

816 bp · LXL04_029329|LXL04_029329|OH1004|cDNA

ATGGGCCAAATTGGTACCCTGTACTGCCTACCAAAACCCTGTGAAGGCATACTTTCGGTGGAGAAGAAGCTCCGGCGAGCTATGGCGAGTGTCGCCACCAGACGTACCCTAAACTCTCTATTCTCTCATCTCAGATCATCACGATCATCATCAATCACTTCTCGGTCTCGATTTTCTCTCCCACTCCTAGACCATCACTACCAATCTCCACAACTCGCTCCTCGAGTTCCTGTTCGACTCAAATCATCGGGGTCGGGTTA...

CDS

Download CDS FASTA

816 bp · LXL04_029329|LXL04_029329|OH1004|CDS

ATGGGCCAAATTGGTACCCTGTACTGCCTACCAAAACCCTGTGAAGGCATACTTTCGGTGGAGAAGAAGCTCCGGCGAGCTATGGCGAGTGTCGCCACCAGACGTACCCTAAACTCTCTATTCTCTCATCTCAGATCATCACGATCATCATCAATCACTTCTCGGTCTCGATTTTCTCTCCCACTCCTAGACCATCACTACCAATCTCCACAACTCGCTCCTCGAGTTCCTGTTCGACTCAAATCATCGGGGTCGGGTTA...

Protein

Download Protein FASTA

271 aa · LXL04_029329|LXL04_029329|OH1004|PROTEIN

MGQIGTLYCLPKPCEGILSVEKKLRRAMASVATRRTLNSLFSHLRSSRSSSITSRSRFSLPLLDHHYQSPQLAPRVPVRLKSSGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEFPTDPKPSEDEMINSYVKTLASVLESEEEAKKKIYSVSTTTYTGFGALISEEISYKVKGLPGVLWVLPDSYLDVPNKDYGGDLFVDGKVIPRPQYRFADRQQNTRPRPRPRYDKRRDTMQTIRRDGWAQDRAQAQNGGG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_029329`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_029329

Location Chr06:87694990-87696477 (-)

Description Similar to MORF3: Multiple organellar RNA editing factor 3, mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g06790`	Involved in organellar RNA editing.	No verified direct reference in this release
`At3g15000`	Involved in organellar RNA editing.	No verified direct reference in this release
`At1g11430`	Involved in organellar RNA editing.	No verified direct reference in this release
`At1g32580`	Involved in organellar RNA editing.	No verified direct reference in this release
`At2g35240`	Involved in organellar RNA editing.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_029329 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006397 mRNA processing Biological Process

GO:0009451 RNA modification Biological Process

GO:0016554 cytidine to uridine editing Biological Process

GO:0080156 mitochondrial mRNA modification Biological Process

GO:1900864 mitochondrial RNA modification Biological Process

GO:1900865 chloroplast RNA modification Biological Process

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009570 chloroplast stroma Cellular Component

KEGG gene cross-reference

ath:AT1G11430

ath:AT1G32580

ath:AT2G35240

ath:AT3G06790

ath:AT3G15000

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.542

Rank 1 · LXL04_029329 · OH-1004

Plastid0.375

Rank 2 · LXL04_029329 · OH-1004

Nucleus0.090

Rank 3 · LXL04_029329 · OH-1004

Cytoplasm0.041

Rank 4 · LXL04_029329 · OH-1004

Cell membrane0.016

Rank 5 · LXL04_029329 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF21864.2MORF_dom113-204 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_029329	`PF21864.2`	MORF_dom	113	204	2e-40	137.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q84JZ6`	Arabidopsis thaliana	Multiple organellar RNA editing factor 3, mitochondrial	72.247%	Swiss-Prot	strong database homology
`Q9LKA5`	Arabidopsis thaliana	Multiple organellar RNA editing factor 8, chloroplastic/mitochondrial	52.261%	Swiss-Prot	strong database homology
`Q9LPZ1`	Arabidopsis thaliana	Multiple organellar RNA editing factor 9, chloroplastic	60.294%	Swiss-Prot	moderate database homology
`Q9C7Y2`	Arabidopsis thaliana	Multiple organellar RNA editing factor 5, chloroplastic/mitochondrial	43.162%	Swiss-Prot	moderate database homology
`O82169`	Arabidopsis thaliana	Multiple organellar RNA editing factor 6, mitochondrial	43.515%	Swiss-Prot	moderate database homology

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