Gene Card
Gene overview
cDNA / CDS / Protein Sequences
525 bp · LXL04_029311|LXL04_029311|OH1004|cDNA
ATGGCTGCTTCTTCAATCTTCATGGCAGCTCCCATCACACTCCTCAAGAAAAAACCCACCTTCTCCGTCAAATGCATGGCGCAAACACCACAAAACGGAGAACCCGAGGCTGCGAAGCCAACAACCACCCCAACACCACAGCCGATCTACACTCCTCCTCCTCCGCCTCCGGCGCCGAAGGTCAGCACGAAATTCTCTGACGTGTTGGCGTTCAGTGGACCTGCACCGGAGAGGATCAACGGAAGGCTGGCGATGATCGG...
525 bp · LXL04_029311|LXL04_029311|OH1004|CDS
ATGGCTGCTTCTTCAATCTTCATGGCAGCTCCCATCACACTCCTCAAGAAAAAACCCACCTTCTCCGTCAAATGCATGGCGCAAACACCACAAAACGGAGAACCCGAGGCTGCGAAGCCAACAACCACCCCAACACCACAGCCGATCTACACTCCTCCTCCTCCGCCTCCGGCGCCGAAGGTCAGCACGAAATTCTCTGACGTGTTGGCGTTCAGTGGACCTGCACCGGAGAGGATCAACGGAAGGCTGGCGATGATCGG...
Protein
Download Protein FASTA174 aa · LXL04_029311|LXL04_029311|OH1004|PROTEIN
MAASSIFMAAPITLLKKKPTFSVKCMAQTPQNGEPEAAKPTTTPTPQPIYTPPPPPPAPKVSTKFSDVLAFSGPAPERINGRLAMIGFVSAMAVEASSGQDVFTQIGNGGVAAFVGTSVVLTLASLVPLFKGVSVQSKSSGVMTSDAELWNGRLAMLGLVALAFTEYVTGSALV
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_029311 |
|---|---|
| TK1151 ID | TkA07G300450 |
| OH-1004 ID | LXL04_029311 |
| Relationship / confidence | Multi Source To Oh1004 / Complex relationship |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_029311 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr06:87115734-87116258 (+) | |||||||||
| Description | Similar to ELIP1: Early light-induced protein 1, chloroplastic | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0009409 response to cold Biological Process GO:0009416 response to light stimulus Biological Process GO:0010030 positive regulation of seed germination Biological Process GO:0010114 response to red light Biological Process GO:0010117 photoprotection Biological Process GO:0010218 response to far red light Biological Process GO:0010224 response to UV-B Biological Process GO:0010380 regulation of chlorophyll biosynthetic process Biological Process GO:0015979 photosynthesis Biological Process GO:0034605 cellular response to heat Biological Process GO:0071483 cellular response to blue light Biological Process GO:0071486 cellular response to high light intensity Biological Process | |||||||||
| KEGG gene cross-reference | ath:AT3G22840 ath:AT4G14690 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00504.29Chloroa_b-bind75-123 aaPF31213.1HliA76-103 aaPF00504.29Chloroa_b-bind136-166 aaPF31213.1HliA141-173 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_029311 | PF00504.29 | Chloroa_b-bind | 75 | 123 | 1.1e-10 | 42.9 |
| LXL04_029311 | PF31213.1 | HliA | 76 | 103 | 1.2e-17 | 64.3 |
| LXL04_029311 | PF00504.29 | Chloroa_b-bind | 136 | 166 | 1.1e-10 | 42.9 |
| LXL04_029311 | PF31213.1 | HliA | 141 | 173 | 1.2e-17 | 64.3 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.