Gene Card
Gene overview
cDNA / CDS / Protein Sequences
534 bp · LXL04_029293|LXL04_029293|OH1004|cDNA
ATGGCTACACCGACATGCCGCTTAATCACCCATTTTCTTCCCGGAAACGTCGTCGATTCCTCCTGCGACACCACCTGTCTCATCTGCACCGACCACTTTAAATCCCAATTACAGTCACTTTTCCGATTGTTCGGTTGCCATCACATCTTCCATGAGAAATGCATCACCCTTTGGCTCTCTAAACACAACACCTGCCCGATGTGCCGCCGTGTCATGCAAATTCCATATCTTCGGATGATCAATCTTCCCCTTCCTCATGG...
534 bp · LXL04_029293|LXL04_029293|OH1004|CDS
ATGGCTACACCGACATGCCGCTTAATCACCCATTTTCTTCCCGGAAACGTCGTCGATTCCTCCTGCGACACCACCTGTCTCATCTGCACCGACCACTTTAAATCCCAATTACAGTCACTTTTCCGATTGTTCGGTTGCCATCACATCTTCCATGAGAAATGCATCACCCTTTGGCTCTCTAAACACAACACCTGCCCGATGTGCCGCCGTGTCATGCAAATTCCATATCTTCGGATGATCAATCTTCCCCTTCCTCATGG...
Protein
Download Protein FASTA177 aa · LXL04_029293|LXL04_029293|OH1004|PROTEIN
MATPTCRLITHFLPGNVVDSSCDTTCLICTDHFKSQLQSLFRLFGCHHIFHEKCITLWLSKHNTCPMCRRVMQIPYLRMINLPLPHGFRLPSHPPDTMRLQVPEQQSDDHDGTSYLCLNFHILPESMKYENHLSQSEMEYLDRIFSSAGYPDDEMRHDLLALACAPFSVVSGVCFVD
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_029293 |
|---|---|
| TK1151 ID | TkA07G297790 |
| OH-1004 ID | LXL04_029293 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_029293 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr06:86358888-86359421 (+) | |||||||||
| Description | Similar to RZF1: E3 ubiquitin-protein ligase RZF1 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006511 ubiquitin-dependent protein catabolic process Biological Process GO:0006970 response to osmotic stress Biological Process GO:0009414 response to water deprivation Biological Process GO:0009651 response to salt stress Biological Process GO:0009738 abscisic acid-activated signaling pathway Biological Process GO:0009938 negative regulation of gibberellic acid mediated signaling pathway Biological Process GO:0016567 protein ubiquitination Biological Process GO:0047484 regulation of response to osmotic stress Biological Process GO:0051865 protein autoubiquitination Biological Process GO:1902006 negative regulation of L-proline biosynthetic process Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT2G40830 ath:AT3G56580 dme:Dmel_CG7694 mmu:66510 xla:431819 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF12678.14zf-rbx121-69 aaPF13639.13zf-RING_225-69 aaPF13923.13zf-C3HC4_226-68 aaPF00097.32zf-C3HC426-68 aaPF14634.13zf-RING_526-70 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_029293 | PF12678.14 | zf-rbx1 | 21 | 69 | 4.9e-08 | 33.8 |
| LXL04_029293 | PF13639.13 | zf-RING_2 | 25 | 69 | 4.1e-11 | 43.7 |
| LXL04_029293 | PF13923.13 | zf-C3HC4_2 | 26 | 68 | 6.8e-08 | 32.9 |
| LXL04_029293 | PF00097.32 | zf-C3HC4 | 26 | 68 | 6e-07 | 29.9 |
| LXL04_029293 | PF14634.13 | zf-RING_5 | 26 | 70 | 7.8e-06 | 26.5 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.