LXL04_029253 | RubberDandelionOmics

Gene overview

LXL04_029253

Reference: OH-1004 Chr: Chr06 Coordinates: 85027499-85033736 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3279 bp · LXL04_029253|LXL04_029253|OH1004|cDNA

ATGCAAGTCTCATGGATGGTATCTGTGGATTATGTGGTGCTATTGGAGGAGTTccagATATGGCGGTGCCAGGTAAGCATGGATCATCGCCATTTAACTGCAGACACTCCACTtgggggtattttggtcaaaacGGTTCTTGATTTGGATCAAAATGCATCCATTACTGAACTTTTAGGCTCAAGAATGAGTTCTTCCGAAATATCCTCACAATTCCATGCAGGAGTGGTTCCTCAAATTCTCGgctttcttttcttctt...

CDS

Download CDS FASTA

3279 bp · LXL04_029253|LXL04_029253|OH1004|CDS

ATGCAAGTCTCATGGATGGTATCTGTGGATTATGTGGTGCTATTGGAGGAGTTCCAGATATGGCGGTGCCAGGTAAGCATGGATCATCGCCATTTAACTGCAGACACTCCACTTGGGGGTATTTTGGTCAAAACGGTTCTTGATTTGGATCAAAATGCATCCATTACTGAACTTTTAGGCTCAAGAATGAGTTCTTCCGAAATATCCTCACAATTCCATGCAGGAGTGGTTCCTCAAATTCTCGGCTTTCTTTTCTTCTT...

Protein

Download Protein FASTA

1092 aa · LXL04_029253|LXL04_029253|OH1004|PROTEIN

MQVSWMVSVDYVVLLEEFQIWRCQVSMDHRHLTADTPLGGILVKTVLDLDQNASITELLGSRMSSSEISSQFHAGVVPQILGFLFFFFFNGASGTTFTFINYCEFTIWPGILGTPDFNLTGFELTKGNSHSFQTPDVWRGTFWGRTGCNFNGSGNISCTTGDCGTGKMDCNGNTYTKPVTIVEFAVKQFQGLDFYDVSLVDGFNLPILVKATGGSGSGLRSCAKTGCADDLNQRCPPELTLTGGGACRSACQTFGSPEYC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_029253`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_029253

Location Chr06:85027499-85033736 (-)

Description Similar to CES101: G-type lectin S-receptor-like serine/threonine-protein kinase CES101

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g16030`	Promotes the expression of genes involved in photosynthesis at least in dedifferentiated calli.	Arabidopsis mutants by activation tagging in which photosynthesis genes are expressed in dedifferentiated calli.2006 · DOI: 10.1093/pcp/pci242
`At4g21390`	G-type lectin S-receptor-like serine/threonine-protein kinase B120.	No verified direct reference in this release
`At1g67520`	G-type lectin S-receptor-like serine/threonine-protein kinase At1g67520.	No verified direct reference in this release
`At1g11330`	G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330.	No verified direct reference in this release
`At1g11300`	G-type lectin S-receptor-like serine/threonine-protein kinase At1g11300.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_029253 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006468 protein phosphorylation Biological Process

GO:0006955 immune response Biological Process

GO:0007165 signal transduction Biological Process

GO:0009620 response to fungus Biological Process

GO:0045087 innate immune response Biological Process

GO:0048544 recognition of pollen Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0004672 protein kinase activity Molecular Function

GO:0004674 protein serine/threonine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT1G11300

ath:AT1G11330

ath:AT1G67520

ath:AT3G16030

ath:AT4G21390

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.833

Rank 1 · LXL04_029253 · OH-1004

Endoplasmic reticulum0.083

Rank 2 · LXL04_029253 · OH-1004

Cytoplasm0.075

Rank 3 · LXL04_029253 · OH-1004

Nucleus0.044

Rank 4 · LXL04_029253 · OH-1004

Lysosome / Vacuole0.035

Rank 5 · LXL04_029253 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00314.23Thaumatin101-312 aa

PF01453.31B_lectin364-467 aa

PF08276.18PAN_2596-653 aa

PF07714.24PK_Tyr_Ser-Thr772-977 aa

PF00069.32Pkinase772-972 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_029253	`PF00314.23`	Thaumatin	101	312	2.1e-69	234.1
LXL04_029253	`PF01453.31`	B_lectin	364	467	4.3e-24	85.7
LXL04_029253	`PF08276.18`	PAN_2	596	653	3.9e-06	27.6
LXL04_029253	`PF07714.24`	PK_Tyr_Ser-Thr	772	977	3.3e-48	165.0
LXL04_029253	`PF00069.32`	Pkinase	772	972	1e-43	150.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LW83`	Arabidopsis thaliana	G-type lectin S-receptor-like serine/threonine-protein kinase CES101	40.421%	Swiss-Prot	moderate database homology
`O81906`	Arabidopsis thaliana	G-type lectin S-receptor-like serine/threonine-protein kinase B120	38.975%	Swiss-Prot	moderate database homology
`O64793`	Arabidopsis thaliana	G-type lectin S-receptor-like serine/threonine-protein kinase At1g67520	40.952%	Swiss-Prot	moderate database homology
`Q9SXB8`	Arabidopsis thaliana	G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330	37.697%	Swiss-Prot	moderate database homology
`Q9SXB4`	Arabidopsis thaliana	G-type lectin S-receptor-like serine/threonine-protein kinase At1g11300	38.983%	Swiss-Prot	moderate database homology

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