LXL04_029249 | RubberDandelionOmics

Gene overview

LXL04_029249

Reference: OH-1004 Chr: Chr06 Coordinates: 84836501-84837314 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

690 bp · LXL04_029249|LXL04_029249|OH1004|cDNA

ATGGATGGGGTGGATACGATCAGTGATTTGCCCGATCATATTCTTCACTTAATTCTTTCGCGTCTTCCAAGTACCGAAGAAGTTCATCGAACCAACATTTTGTCGAAACGATGGAGGTATCTGTGGACTTCAATCCCCTCTATAGACACCGATTATGCCCGACAAAAGTACCGAAAGGGTAAATGGGACATGTTTGAAGAGTTTGTGTATTGGGTTTTAGCAACCAAATCATCCGATTTGGATAGTTTTCGGTTATGTTA...

CDS

Download CDS FASTA

690 bp · LXL04_029249|LXL04_029249|OH1004|CDS

ATGGATGGGGTGGATACGATCAGTGATTTGCCCGATCATATTCTTCACTTAATTCTTTCGCGTCTTCCAAGTACCGAAGAAGTTCATCGAACCAACATTTTGTCGAAACGATGGAGGTATCTGTGGACTTCAATCCCCTCTATAGACACCGATTATGCCCGACAAAAGTACCGAAAGGGTAAATGGGACATGTTTGAAGAGTTTGTGTATTGGGTTTTAGCAACCAAATCATCCGATTTGGATAGTTTTCGGTTATGTTA...

Protein

Download Protein FASTA

229 aa · LXL04_029249|LXL04_029249|OH1004|PROTEIN

MDGVDTISDLPDHILHLILSRLPSTEEVHRTNILSKRWRYLWTSIPSIDTDYARQKYRKGKWDMFEEFVYWVLATKSSDLDSFRLCYPGYYHVSRVEHWIRIAVMRRVKVVDLMICHRVWCEKLSIRLMFPVSGVSPFDHSRDNAEARRILGACLKRVEFLQFKGERRKLPVVRSLLKHGNVLEKMVFNWHNYYRDKSIKTMKKVSKFPKASSTVKLITLINESTTKVQ

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_029249`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_029249

Location Chr06:84836501-84837314 (-)

Description Similar to At3g59200: F-box/LRR-repeat protein At3g59200

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g59200`	F-box/LRR-repeat protein At3g59200.	No verified direct reference in this release
`At4g26350`	Putative F-box/FBD/LRR-repeat protein At4g26350.	No verified direct reference in this release
`At2g04230`	F-box/FBD/LRR-repeat protein At2g04230.	No verified direct reference in this release
`At4g13960`	Putative F-box/LRR-repeat protein At4g13960.	No verified direct reference in this release
`At5g02920`	F-box/LRR-repeat protein 25.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_029249 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006511 ubiquitin-dependent protein catabolic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0009507 chloroplast Cellular Component

KEGG gene cross-reference

ath:AT2G04230

ath:AT3G59200

ath:AT4G26350

ath:AT5G02920

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.749

Rank 1 · LXL04_029249 · OH-1004

Cytoplasm0.294

Rank 2 · LXL04_029249 · OH-1004

Cell membrane0.050

Rank 3 · LXL04_029249 · OH-1004

Endoplasmic reticulum0.043

Rank 4 · LXL04_029249 · OH-1004

Plastid0.020

Rank 5 · LXL04_029249 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00646.39F-box7-46 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_029249	`PF00646.39`	F-box	7	46	3.2e-06	27.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LX51`	Arabidopsis thaliana	F-box/LRR-repeat protein At3g59200	29.545%	Swiss-Prot	weak database homology
`Q9STQ0`	Arabidopsis thaliana	Putative F-box/FBD/LRR-repeat protein At4g26350	38.793%	Swiss-Prot	weak database homology
`Q6NKX3`	Arabidopsis thaliana	F-box/FBD/LRR-repeat protein At2g04230	41.284%	Swiss-Prot	weak database homology
`O23257`	Arabidopsis thaliana	Putative F-box/LRR-repeat protein At4g13960	36.429%	Swiss-Prot	moderate database homology
`Q1PE04`	Arabidopsis thaliana	F-box/LRR-repeat protein 25	34.426%	Swiss-Prot	moderate database homology

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