Gene Card
Gene overview
cDNA / CDS / Protein Sequences
975 bp · LXL04_029229|LXL04_029229|OH1004|cDNA
ATGTTCTCATTGTATTCAGACACAAAACACAAAATGGGGTTGAAGAGTAAAATTTTGATCATCGGAGGAACAGGATACTTAGGGAAGAGGCTAGTCAACGCCAGTTTAGCGCAAGGCCACGAGACCTACGTTCTCCGACGACCGGAGATCGGCGTCGATATTGAAAAAATCCAGATGCTTCTATCTTTCAAGAATCAAGGAGCTACGCTCGTTACTGGTTCATTCAGCGATCATCAAAGCCTTGTCGAAGCTCTGAAGCA...
975 bp · LXL04_029229|LXL04_029229|OH1004|CDS
ATGTTCTCATTGTATTCAGACACAAAACACAAAATGGGGTTGAAGAGTAAAATTTTGATCATCGGAGGAACAGGATACTTAGGGAAGAGGCTAGTCAACGCCAGTTTAGCGCAAGGCCACGAGACCTACGTTCTCCGACGACCGGAGATCGGCGTCGATATTGAAAAAATCCAGATGCTTCTATCTTTCAAGAATCAAGGAGCTACGCTCGTTACTGGTTCATTCAGCGATCATCAAAGCCTTGTCGAAGCTCTGAAGCA...
Protein
Download Protein FASTA324 aa · LXL04_029229|LXL04_029229|OH1004|PROTEIN
MFSLYSDTKHKMGLKSKILIIGGTGYLGKRLVNASLAQGHETYVLRRPEIGVDIEKIQMLLSFKNQGATLVTGSFSDHQSLVEALKQVDVVICAVSGVHIRSHQILLQLKLVDAIKEAGNIKRFLPSEFGTDPAKMADALEPGRVTFDDKMVVRKAIEDAGIPFTYVSANCFAGYMVGGLCQPGHILPSKESVLLLGDGNKKSIFVDEDDIAAYTIRTIDDPRTCNKTVYIRPSENILSQREIVKLWEKLIGKQLQKSSL...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_029229 |
|---|---|
| TK1151 ID | TkA07G287700 |
| OH-1004 ID | LXL04_029229 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 97.200 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_029229 |
|---|---|
| Location | Chr06:84271866-84273071 (+) |
| Description | Similar to PLR_Lu2: Bifunctional pinoresinol-lariciresinol reductase 2 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0009411 response to UV Biological Process GO:0009611 response to wounding Biological Process GO:0009699 phenylpropanoid biosynthetic process Biological Process GO:0009753 response to jasmonic acid Biological Process GO:0009807 lignan biosynthetic process Biological Process GO:1902125 (+)-pinoresinol catabolic process Biological Process GO:1902129 (-)-lariciresinol biosynthetic process Biological Process GO:1902131 (+)-lariciresinol catabolic process Biological Process GO:1902132 (+)-lariciresinol biosynthetic process Biological Process GO:1902138 (-)-secoisolariciresinol biosynthetic process Biological Process GO:0010283 pinoresinol reductase activity Molecular Function GO:0010284 lariciresinol reductase activity Molecular Function |
| KEGG gene cross-reference | ag:AAC49608 ag:ABW86959 ag:ABY75535 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF05368.20NmrA15-320 aaPF01370.28Epimerase18-125 aaPF13460.13NAD_binding_1022-169 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_029229 | PF05368.20 | NmrA | 15 | 320 | 5e-67 | 227.3 |
| LXL04_029229 | PF01370.28 | Epimerase | 18 | 125 | 9.3e-11 | 42.3 |
| LXL04_029229 | PF13460.13 | NAD_binding_10 | 22 | 169 | 1.5e-13 | 51.7 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.