LXL04_029227 | RubberDandelionOmics

Gene overview

LXL04_029227

Reference: OH-1004 Chr: Chr06 Coordinates: 84245216-84247560 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1509 bp · LXL04_029227|LXL04_029227|OH1004|cDNA

ATGCATACAGAAGGTCTTAACTCAAGTTTTTTATATGCTCTTCATATCAGAATTGCATCTGCTCCTGGAAAGGTTCTAATTACCGGAGGTTACCTAATCTTAGAGAGGCCAAATGCAGGAATTGTACTAAGCACAAATGCCCGATTTTATGCAATTGTAAAGCCACTTTATGATGAACTTAAACCAGAGTGTTGGCTTTGGTCATGGACGGATGTGAAGTTAACTTCTCCCCAATTAAACCGTGAATCCATTGAAACAAG...

CDS

Download CDS FASTA

1509 bp · LXL04_029227|LXL04_029227|OH1004|CDS

ATGCATACAGAAGGTCTTAACTCAAGTTTTTTATATGCTCTTCATATCAGAATTGCATCTGCTCCTGGAAAGGTTCTAATTACCGGAGGTTACCTAATCTTAGAGAGGCCAAATGCAGGAATTGTACTAAGCACAAATGCCCGATTTTATGCAATTGTAAAGCCACTTTATGATGAACTTAAACCAGAGTGTTGGCTTTGGTCATGGACGGATGTGAAGTTAACTTCTCCCCAATTAAACCGTGAATCCATTGAAACAAG...

Protein

Download Protein FASTA

502 aa · LXL04_029227|LXL04_029227|OH1004|PROTEIN

MHTEGLNSSFLYALHIRIASAPGKVLITGGYLILERPNAGIVLSTNARFYAIVKPLYDELKPECWLWSWTDVKLTSPQLNRESIETRNPFVEYAVQYAVAAAYATLGNDKKDALQKLLLQGFDITILGGNDFYSYRNEIESRGLPLTPESLASLPPFTSITFNSTHSNGESNSKPEVAKTGLGSSAAMTTAVVAALLSYLGVVNLSSDSGAHQENLDVIHIIAQMAHCMAQGKVGSGFDVSSAVYGSHRYVRFSPQLISS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_029227`
TK1151 ID	TkA07G287680
OH-1004 ID	LXL04_029227
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	95.800
Protein coverage (%)	TK1151 99.404 / OH-1004 96.614 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_029227

Location Chr06:84245216-84247560 (-)

Description Similar to PMK: Phosphomevalonate kinase, peroxisomal

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g31910`	Phosphomevalonate kinase, peroxisomal.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_029227 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006696 ergosterol biosynthetic process Biological Process

GO:0010142 farnesyl diphosphate biosynthetic process, mevalonate pathway Biological Process

GO:0016126 sterol biosynthetic process Biological Process

GO:0019287 isopentenyl diphosphate biosynthetic process, mevalonate pathway Biological Process

GO:0031388 organic acid phosphorylation Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005777 peroxisome Cellular Component

GO:0005829 cytosol Cellular Component

GO:0004631 phosphomevalonate kinase activity Molecular Function

KEGG gene cross-reference

ath:AT1G31910

cal:CAALFM_C401870CA

fgr:FGSG_09764

sce:YMR220W

spo:2543184

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.804

Rank 1 · LXL04_029227 · OH-1004

Nucleus0.459

Rank 2 · LXL04_029227 · OH-1004

Peroxisome0.072

Rank 3 · LXL04_029227 · OH-1004

Mitochondrion0.060

Rank 4 · LXL04_029227 · OH-1004

Endoplasmic reticulum0.034

Rank 5 · LXL04_029227 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00288.33GHMP_kinases_N179-246 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_029227	`PF00288.33`	GHMP_kinases_N	179	246	1.3e-06	29.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9C6T1`	Arabidopsis thaliana	Phosphomevalonate kinase, peroxisomal	66.402%	Swiss-Prot	strong database homology

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