LXL04_029205 | RubberDandelionOmics

Gene overview

LXL04_029205

Reference: OH-1004 Chr: Chr06 Coordinates: 83725138-83726661 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

668 bp · LXL04_029205|LXL04_029205|OH1004|cDNA

TCCAAAACTTATGTTAATGCCTGCATTTTGTGTACAAATTTCAGCTCAAAGAACTTGAAAAATTGGGCCCTAGAAAAGGCGTCATCAGCCAATCTGTCAAAGATGTTGTCCAAACTCTAGTGGATGATGACTTGGTCTCAAAAGACAAGATAGGAACCTCGGTATACTTTTGGAGTCTTCCTAGTTGTGCTGGAAACCAGCTAAGAAATATGTCTAAGAAACTTCAGTCAGACCTTGAAATCAGCAAGAAGCGGCATATA...

CDS

Download CDS FASTA

648 bp · LXL04_029205|LXL04_029205|OH1004|CDS

CTGCATTTTGTGTACAAATTTCAGCTCAAAGAACTTGAAAAATTGGGCCCTAGAAAAGGCGTCATCAGCCAATCTGTCAAAGATGTTGTCCAAACTCTAGTGGATGATGACTTGGTCTCAAAAGACAAGATAGGAACCTCGGTATACTTTTGGAGTCTTCCTAGTTGTGCTGGAAACCAGCTAAGAAATATGTCTAAGAAACTTCAGTCAGACCTTGAAATCAGCAAGAAGCGGCATATAGAACTTGTGGAACAATGTGA...

Protein

Download Protein FASTA

215 aa · LXL04_029205|LXL04_029205|OH1004|PROTEIN

MHFVYKFQLKELEKLGPRKGVISQSVKDVVQTLVDDDLVSKDKIGTSVYFWSLPSCAGNQLRNMSKKLQSDLEISKKRHIELVEQCESLKKGREDSDAREEALSEFKAIEQKYNNLKEELGQYADNDPATFEAMITKFGKFYDLILEEAIKVSHEAANRWTDNIFTLRQWCSNNFPQAKEQLEQLYNEAGITEDFDYLELPAVTPVTVKQVKADE

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_029205`
TK1151 ID	TkA07G284640
OH-1004 ID	LXL04_029205
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	91.400
Protein coverage (%)	TK1151 100.000 / OH-1004 70.698 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_029205

Location Chr06:83725138-83726661 (+)

Description Similar to MND1: Meiotic nuclear division protein 1 homolog

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g29170`	Required for proper homologous chromosome pairing and efficient cross-over and intragenic recombination during meiosis.	The Arabidopsis thaliana MND1 homologue plays a key role in meiotic homologous pairing, synapsis and recombination.2006 · DOI: 10.1242/jcs.02967 AtMND1 is required for homologous pairing during meiosis in Arabidopsis.2006 · DOI: 10.1186/1471-2199-7-24 The interplay of RecA-related proteins and the MND1-HOP2 complex during meiosis in Arabidopsis thaliana.2007 · DOI: 10.1371/journal.pgen.0030176

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_029205 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006302 double-strand break repair Biological Process

GO:0007129 homologous chromosome pairing at meiosis Biological Process

GO:0007131 reciprocal meiotic recombination Biological Process

GO:0009553 embryo sac development Biological Process

GO:0009555 pollen development Biological Process

GO:0010212 response to ionizing radiation Biological Process

GO:0005634 nucleus Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0003690 double-stranded DNA binding Molecular Function

KEGG gene cross-reference

ath:AT4G29170

bta:618239

hsa:84057

mmu:76915

xla:108699336

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.595

Rank 1 · LXL04_029205 · OH-1004

Cytoplasm0.464

Rank 2 · LXL04_029205 · OH-1004

Mitochondrion0.043

Rank 3 · LXL04_029205 · OH-1004

Endoplasmic reticulum0.039

Rank 4 · LXL04_029205 · OH-1004

Cell membrane0.037

Rank 5 · LXL04_029205 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03962.22Mnd17-54 aa

PF18517.7LZ3wCH147-198 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_029205	`PF03962.22`	Mnd1	7	54	1.3e-21	77.3
LXL04_029205	`PF18517.7`	LZ3wCH	147	198	3.9e-20	72.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8GYD2`	Arabidopsis thaliana	Meiotic nuclear division protein 1 homolog	65.278%	Swiss-Prot	strong database homology

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