Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1164 bp · LXL04_029178|LXL04_029178|OH1004|cDNA
ATGGGAAGCAGTGAGATGGATAAACCCGCCAAGGAGGCAAAAGACTCCACAAAGGAGCCAAAGACACCAACTTCTCAAGAGCAGACTTCAGGTACTGCCACTGGTACAGTCAATCCAGATTGGACAGGATTTCAGCCATATCCTCATATGCCTCCACATGGGTACATGGCATCAAGCCCTCAAGGTCCTCCCCCCTACATGTGGGGTGTTCAGCAATTTATGCCACCTTATGGTACCCCTCCACATCCATATGTTGCAAT...
1164 bp · LXL04_029178|LXL04_029178|OH1004|CDS
ATGGGAAGCAGTGAGATGGATAAACCCGCCAAGGAGGCAAAAGACTCCACAAAGGAGCCAAAGACACCAACTTCTCAAGAGCAGACTTCAGGTACTGCCACTGGTACAGTCAATCCAGATTGGACAGGATTTCAGCCATATCCTCATATGCCTCCACATGGGTACATGGCATCAAGCCCTCAAGGTCCTCCCCCCTACATGTGGGGTGTTCAGCAATTTATGCCACCTTATGGTACCCCTCCACATCCATATGTTGCAAT...
Protein
Download Protein FASTA387 aa · LXL04_029178|LXL04_029178|OH1004|PROTEIN
MGSSEMDKPAKEAKDSTKEPKTPTSQEQTSGTATGTVNPDWTGFQPYPHMPPHGYMASSPQGPPPYMWGVQQFMPPYGTPPHPYVAMYPPGGIYAHPSMPPGSYPFNPYAMPSPNGGAEASGNSHTPGNTEVDGKSPDGKEKLPIKRSKGSLGSLNMITGKNNEPGKAGASANGVYPKSAESGSEGSSEGTEGNSENDSQMKSGSRQDSIEVLASQNGNSGHVSENGGPNVANNQTMAVGPATNLNIGMDYWNGTNPSNI...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_029178 |
|---|---|
| TK1151 ID | TkA07G282540 |
| OH-1004 ID | LXL04_029178 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 97.700 |
| Protein coverage (%) | TK1151 98.972 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_029178 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr06:82542168-82546446 (-) | |||||||||
| Description | Similar to BZIP16: bZIP transcription factor 16 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006351 DNA-templated transcription Biological Process GO:0006355 regulation of DNA-templated transcription Biological Process GO:0006952 defense response Biological Process GO:0045893 positive regulation of DNA-templated transcription Biological Process GO:0005634 nucleus Cellular Component GO:0000976 transcription cis-regulatory region binding Molecular Function GO:0003700 DNA-binding transcription factor activity Molecular Function GO:0042802 identical protein binding Molecular Function GO:0043565 sequence-specific DNA binding Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT1G32150 ath:AT2G35530 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF07777.17MFMR1-100 aaPF16596.11MFMR_assoc141-260 aaPF03131.23bZIP_Maf277-352 aaPF00170.27bZIP_1287-349 aaPF07716.21bZIP_2289-341 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_029178 | PF07777.17 | MFMR | 1 | 100 | 9.7e-26 | 90.9 |
| LXL04_029178 | PF16596.11 | MFMR_assoc | 141 | 260 | 2.2e-31 | 109.8 |
| LXL04_029178 | PF03131.23 | bZIP_Maf | 277 | 352 | 3.7e-06 | 28.1 |
| LXL04_029178 | PF00170.27 | bZIP_1 | 287 | 349 | 3.6e-20 | 72.5 |
| LXL04_029178 | PF07716.21 | bZIP_2 | 289 | 341 | 1.4e-07 | 32.1 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.