LXL04_029150 | RubberDandelionOmics

Gene overview

LXL04_029150

Reference: OH-1004 Chr: Chr06 Coordinates: 81921747-81925449 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1482 bp · LXL04_029150|LXL04_029150|OH1004|cDNA

ATGATTTCAGCAATATCATGGGTTCCTAAAGGGGCTTCCAAATCTGTCCCTGCGGCAGCTGATCCTCCTTCAAAAGAGGAAATCGAGGAGATAAAGAAGACAGTCCTCGTGGGACAAGGTGTAGATGTTGAAAGCgaggaagatgatgaagatatGAGTGTTGATGCGACTAAGCAACCTGCTGATATTGAGCAGGCGTTAGGTGCAGCTAATGCACTTGGTAAGGTTTCTACAAGGAAAACTGGTGGATCTAACCTCGC...

CDS

Download CDS FASTA

1482 bp · LXL04_029150|LXL04_029150|OH1004|CDS

ATGATTTCAGCAATATCATGGGTTCCTAAAGGGGCTTCCAAATCTGTCCCTGCGGCAGCTGATCCTCCTTCAAAAGAGGAAATCGAGGAGATAAAGAAGACAGTCCTCGTGGGACAAGGTGTAGATGTTGAAAGCGAGGAAGATGATGAAGATATGAGTGTTGATGCGACTAAGCAACCTGCTGATATTGAGCAGGCGTTAGGTGCAGCTAATGCACTTGGTAAGGTTTCTACAAGGAAAACTGGTGGATCTAACCTCGC...

Protein

Download Protein FASTA

493 aa · LXL04_029150|LXL04_029150|OH1004|PROTEIN

MISAISWVPKGASKSVPAAADPPSKEEIEEIKKTVLVGQGVDVESEEDDEDMSVDATKQPADIEQALGAANALGKVSTRKTGGSNLADIADGLDELNMDDYDDEDDAVDIFGSGLGDTFYPSNELDPYIKDKDEDEDSEELDDVIIKADDAVVVWIVEDPDGDSNMYVHHDILIPAFPLCTAWLDCPIKGGEKGNFIAVGSMEPAIEIWDLDVMDEVQPSLILGGVAEKKKKKKGKKTEKSIKYKEDSHTDAVLGLAWNK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_029150`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_029150`
Location	Chr06:81921747-81925449 (-)
Description	Similar to PWP1: Periodic tryptophan protein 1 homolog
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_029150` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0006351 DNA-templated transcription Biological Process GO:0006364 rRNA processing Biological Process GO:0045892 negative regulation of DNA-templated transcription Biological Process GO:1901838 positive regulation of transcription of nucleolar large rRNA by RNA polymerase I Biological Process GO:2000738 positive regulation of stem cell differentiation Biological Process GO:0005634 nucleus Cellular Component GO:0005694 chromosome Cellular Component GO:0005730 nucleolus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005794 Golgi apparatus Cellular Component GO:0005829 cytosol Cellular Component GO:1990889 histone H4K20me3 reader activity Molecular Function
KEGG gene cross-reference	bta:514147 hsa:11137 mmu:103136 sce:YLR196W spo:2539789 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.815

Rank 1 · LXL04_029150 · OH-1004

Cytoplasm0.299

Rank 2 · LXL04_029150 · OH-1004

Cell membrane0.035

Rank 3 · LXL04_029150 · OH-1004

Mitochondrion0.027

Rank 4 · LXL04_029150 · OH-1004

Endoplasmic reticulum0.024

Rank 5 · LXL04_029150 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24105.2Beta-prop_CAF1B_HIR1192-310 aa

PF25174.2Beta-prop_THOC3194-294 aa

PF24797.2Beta-prop_WDR35_TULP_N194-374 aa

PF24814.2WD40_Prp19215-296 aa

PF23775.2Beta-prop_RIG_2nd226-292 aa

PF24807.2WD40_CDC20-Fz240-357 aa

PF24817.2WD40_WDHD1_1st242-318 aa

PF25173.2Beta-prop_WDR3_1st245-325 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_029150	`PF24105.2`	Beta-prop_CAF1B_HIR1	192	310	5.6e-09	36.2
LXL04_029150	`PF25174.2`	Beta-prop_THOC3	194	294	3.9e-32	112.0
LXL04_029150	`PF24797.2`	Beta-prop_WDR35_TULP_N	194	374	3.8e-06	27.0
LXL04_029150	`PF24814.2`	WD40_Prp19	215	296	1.1e-18	68.0
LXL04_029150	`PF23775.2`	Beta-prop_RIG_2nd	226	292	1.6e-16	61.2
LXL04_029150	`PF24807.2`	WD40_CDC20-Fz	240	357	6.6e-29	101.8
LXL04_029150	`PF24817.2`	WD40_WDHD1_1st	242	318	3.2e-14	53.5
LXL04_029150	`PF25173.2`	Beta-prop_WDR3_1st	245	325	3.3e-22	79.8
LXL04_029150	`PF23381.2`	Beta-prop_IFT122_1st	246	470	1.5e-22	80.9
LXL04_029150	`PF25175.2`	Beta-prop_WDR5	247	330	1.3e-23	84.4
LXL04_029150	`PF00400.39`	WD40	247	279	5.5e-22	77.9
LXL04_029150	`PF24782.3`	WD40_MABP1-WDR62_2nd	247	460	2.8e-09	37.1
LXL04_029150	`PF25178.1`	Beta-prop_WDR41	248	330	4.5e-06	26.4
LXL04_029150	`PF24805.2`	EIF3I	249	381	1.8e-09	37.9
LXL04_029150	`PF24814.2`	WD40_Prp19	250	469	1.1e-18	68.0
LXL04_029150	`PF25460.2`	Beta-prop_Aladin	303	457	2.4e-09	37.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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