RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_029143
Reference: OH-1004 Chr: Chr06 Coordinates: 81841159-81843285 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2127 bp · LXL04_029143|LXL04_029143|OH1004|cDNA

ATGGAGGCGTTCCTGGAAGAGTTTCAACATCTTAAAATCCAACTAGAAGAGATAAAGTCAGCCACAGGCGATTTTAATAGCAGCAAAATCATCGGAAAAGGTGGGTTTGGGGTGGTGCACGAAGGAGTGCTCTCACACTCCAAGAAGCAAAACATGGTTGCTTTCAAACGGCTAGATCGAAGGCATGGGCAAGGCGATCCTGAGTTCTGGAAAGAGATCTTGATGCTTTCCCGTTACACACACAAAAATCTCATATCACT...

CDS

Download CDS FASTA

2127 bp · LXL04_029143|LXL04_029143|OH1004|CDS

ATGGAGGCGTTCCTGGAAGAGTTTCAACATCTTAAAATCCAACTAGAAGAGATAAAGTCAGCCACAGGCGATTTTAATAGCAGCAAAATCATCGGAAAAGGTGGGTTTGGGGTGGTGCACGAAGGAGTGCTCTCACACTCCAAGAAGCAAAACATGGTTGCTTTCAAACGGCTAGATCGAAGGCATGGGCAAGGCGATCCTGAGTTCTGGAAAGAGATCTTGATGCTTTCCCGTTACACACACAAAAATCTCATATCACT...

Protein

Download Protein FASTA

708 aa · LXL04_029143|LXL04_029143|OH1004|PROTEIN

MEAFLEEFQHLKIQLEEIKSATGDFNSSKIIGKGGFGVVHEGVLSHSKKQNMVAFKRLDRRHGQGDPEFWKEILMLSRYTHKNLISLLGFCDQDGEKIIVYEYASNGSLDRHLSSTSLTWKQRLKICLGAAMGLCYLHDPKETQQRVIHRDIKSSNILLDENWNAKISDMGLSKIGPANQQHTFVVSNVVGTFGYVDPMYVETSILTKESDVYSFGVVLFEVLCGRLCFENKNNHFQNLVPMWKKSFKQKKLDEIVFQDL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDLXL04_029143
Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_029143
LocationChr06:81841159-81843285 (-)
DescriptionSimilar to ITN1: Ankyrin repeat-containing protein ITN1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g12360 Involved in salt stress tolerance.
ITN1, a novel gene encoding an ankyrin-repeat protein that affects the ABA-mediated production of reactive oxygen species and is involved in salt-stress tolerance in Arabidopsis thaliana.2008 · DOI: 10.1111/j.1365-313x.2008.03614.x
At5g38990 Probable receptor-like protein kinase At5g38990. No verified direct reference in this release
At5g39000 Putative receptor-like protein kinase At5g39000. No verified direct reference in this release
At3g46290 Receptor-like protein kinase required for cell elongation during vegetative growth, mostly in a brassinosteroid-(BR-) independent manner.
Three related receptor-like kinases are required for optimal cell elongation in Arabidopsis thaliana.2009 · DOI: 10.1073/pnas.0812346106

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0837000 Involved in salt stress tolerance. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_029143 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0009651 response to salt stress Biological Process
GO:0009741 response to brassinosteroid Biological Process
GO:0009826 unidimensional cell growth Biological Process
GO:0010038 response to metal ion Biological Process
GO:0010183 pollen tube guidance Biological Process
GO:0010483 pollen tube reception Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009506 plasmodesma Cellular Component
GO:0009536 plastid Cellular Component
KEGG gene cross-reference
ath:AT3G12360
ath:AT3G46290
ath:AT5G38990
ath:AT5G39000
dosa:Os01g0837000
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.592
Rank 1 · LXL04_029143 · OH-1004
Cytoplasm0.293
Rank 2 · LXL04_029143 · OH-1004
Nucleus0.243
Rank 3 · LXL04_029143 · OH-1004
Endoplasmic reticulum0.046
Rank 4 · LXL04_029143 · OH-1004
Golgi apparatus0.033
Rank 5 · LXL04_029143 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069.32Pkinase26-294 aa
PF07714.24PK_Tyr_Ser-Thr28-297 aa
PF12796.14Ank_2378-452 aa
PF24521.3Ank_KRIT1380-496 aa
PF12796.14Ank_2383-492 aa
PF24521.3Ank_KRIT1429-522 aa
PF12796.14Ank_2466-520 aa
PF00023.37Ank468-491 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_029143PF00069.32Pkinase262946.4e-44151.0
LXL04_029143PF07714.24PK_Tyr_Ser-Thr282976.8e-43147.5
LXL04_029143PF12796.14Ank_23784524.2e-66220.3
LXL04_029143PF24521.3Ank_KRIT13804962.1e-1557.4
LXL04_029143PF12796.14Ank_23834924.2e-66220.3
LXL04_029143PF24521.3Ank_KRIT14295222.1e-1557.4
LXL04_029143PF12796.14Ank_24665204.2e-66220.3
LXL04_029143PF00023.37Ank4684913.5e-38128.2
LXL04_029143PF12796.14Ank_24695574.2e-66220.3
LXL04_029143PF13637.13Ank_44695161.7e-2795.5
LXL04_029143PF13637.13Ank_45045531.7e-2795.5
LXL04_029143PF12796.14Ank_25285904.2e-66220.3
LXL04_029143PF13857.13Ank_55305613.8e-2691.6
LXL04_029143PF00023.37Ank5325553.5e-38128.2
LXL04_029143PF13606.13Ank_35325564.1e-31103.9
LXL04_029143PF13637.13Ank_45375871.7e-2795.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9C7A2Arabidopsis thalianaAnkyrin repeat-containing protein ITN161.254%Swiss-Protweak database homology
Q9FID9Arabidopsis thalianaProbable receptor-like protein kinase At5g3899046.179%Swiss-Protweak database homology
Q9FID8Arabidopsis thalianaPutative receptor-like protein kinase At5g3900045.515%Swiss-Protweak database homology
Q9LX66Arabidopsis thalianaReceptor-like protein kinase HERK 147.333%Swiss-Protweak database homology
A2CIR5Oryza sativa subsp. japonicaAnkyrin repeat-containing protein NPR452.525%Swiss-Protweak database homology

JBrowse

View in Genome Browser