Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2790 bp · LXL04_029096|LXL04_029096|OH1004|cDNA
ATGCGATCAAACGAACTTCATCACCAACTTCGTTCCGACTTGGTTGAACATATTTGGTCGAATAGCAATCATTTTTCTTCTCCGATTAGGGATCGCGATCAAGATTTTTGGGGAAAGATGAGTTCTTTTTCAATTACAAGGAAAAAAACACCTTTTCAAAAGCACCGTGAAGAAGAAGAGGCAAAGAAAAAGAGGGCTGAAGATGAAACAGCTCGTTTATATGCTGAGTTTCTGGAATCATTTCAAGGGGATGATGCACC...
2790 bp · LXL04_029096|LXL04_029096|OH1004|CDS
ATGCGATCAAACGAACTTCATCACCAACTTCGTTCCGACTTGGTTGAACATATTTGGTCGAATAGCAATCATTTTTCTTCTCCGATTAGGGATCGCGATCAAGATTTTTGGGGAAAGATGAGTTCTTTTTCAATTACAAGGAAAAAAACACCTTTTCAAAAGCACCGTGAAGAAGAAGAGGCAAAGAAAAAGAGGGCTGAAGATGAAACAGCTCGTTTATATGCTGAGTTTCTGGAATCATTTCAAGGGGATGATGCACC...
Protein
Download Protein FASTA929 aa · LXL04_029096|LXL04_029096|OH1004|PROTEIN
MRSNELHHQLRSDLVEHIWSNSNHFSSPIRDRDQDFWGKMSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFLESFQGDDAPGLKAFVRGGTVNDEKVKPDTGGNSKDVSGSKKGSRYVPSFLPPPMATKGKEHERQREEERPKEKGKGKARNIDYFMEELKHEQEMRERRNQERDQWHDGGRQTTAPSTLSTRFDELPDDFDGKPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEE...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_029096 |
|---|---|
| TK1151 ID | TkA07G272170 |
| OH-1004 ID | LXL04_029096 |
| Relationship / confidence | Sequence Supported Annotation Or Model Conflict / Review |
| Protein identity (%) | 99.600 |
| Protein coverage (%) | TK1151 92.793 / OH-1004 55.436Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_029096 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr06:80746013-80753262 (+) | |||||||||
| Description | Similar to RRC1: Protein RRC1 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006396 RNA processing Biological Process GO:0006397 mRNA processing Biological Process GO:0008380 RNA splicing Biological Process GO:0010017 red or far-red light signaling pathway Biological Process GO:0010099 regulation of photomorphogenesis Biological Process GO:0010114 response to red light Biological Process GO:0043484 regulation of RNA splicing Biological Process GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0005686 U2 snRNP Cellular Component GO:0005737 cytoplasm Cellular Component GO:0016607 nuclear speck Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT5G10800 ath:AT5G25060 hsa:23350 mmu:67958 pon:100174588 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00076.29RRM_1224-296 aaPF01805.27Surp365-429 aaPF04818.20CID485-613 aaPF08312.18cwf21812-853 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_029096 | PF00076.29 | RRM_1 | 224 | 296 | 9.3e-12 | 45.4 |
| LXL04_029096 | PF01805.27 | Surp | 365 | 429 | 4.6e-19 | 68.5 |
| LXL04_029096 | PF04818.20 | CID | 485 | 613 | 3.6e-08 | 34.4 |
| LXL04_029096 | PF08312.18 | cwf21 | 812 | 853 | 2.5e-06 | 28.1 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.