Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1017 bp · LXL04_029004|LXL04_029004|OH1004|cDNA
ATGGCGCTTAGAGCTCTCGATAACACACTGCCCTTAACCCCTGAACGCCCTAAAAAGGTTATCAAAGTTTCGAATTCCACCGCTAAACCTAAACAGCCCGCAGATTCGAATGTTAATAACGAAAACGTAGCTCCTATGGATCCTGTTACTCCTGCCGTGGATTCAGTTGATTACGTCTCTTCTGAAGATCTAAAACCCCTTTCTGACCCTGATGTCAAGTTCCAGGGCCTAATCGAAGGACTGGAGTCCAAGGACTGGCT...
1017 bp · LXL04_029004|LXL04_029004|OH1004|CDS
ATGGCGCTTAGAGCTCTCGATAACACACTGCCCTTAACCCCTGAACGCCCTAAAAAGGTTATCAAAGTTTCGAATTCCACCGCTAAACCTAAACAGCCCGCAGATTCGAATGTTAATAACGAAAACGTAGCTCCTATGGATCCTGTTACTCCTGCCGTGGATTCAGTTGATTACGTCTCTTCTGAAGATCTAAAACCCCTTTCTGACCCTGATGTCAAGTTCCAGGGCCTAATCGAAGGACTGGAGTCCAAGGACTGGCT...
Protein
Download Protein FASTA338 aa · LXL04_029004|LXL04_029004|OH1004|PROTEIN
MALRALDNTLPLTPERPKKVIKVSNSTAKPKQPADSNVNNENVAPMDPVTPAVDSVDYVSSEDLKPLSDPDVKFQGLIEGLESKDWLKVCESLNDVRRMALHHSTLLLPILEKVVLVLVKSMKNPRSALCKTSIMAASDVFKSYGDKLLESTTCDAVDHMILQLLLKASQDKKFVCEEAEKTLKTMVAFIAPIPLLHKLKAYVSHGNMRVRAKAAVSISHSVSKMNVGEMREYGVVVLVKMAAELLKDRLPEAREAARSM...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_029004 |
|---|---|
| TK1151 ID | TkA07G260880 |
| OH-1004 ID | LXL04_029004 |
| Relationship / confidence | Rbh Sequence Supported / Probable |
| Protein identity (%) | 92.400 |
| Protein coverage (%) | TK1151 88.710 / OH-1004 81.361Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_029004 |
|---|---|
| Location | Chr06:77576554-77578697 (+) |
| Description | Similar to Togaram1: TOG array regulator of axonemal microtubules protein 1 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0000226 microtubule cytoskeleton organization Biological Process GO:0031116 positive regulation of microtubule polymerization Biological Process GO:0035082 axoneme assembly Biological Process GO:0060271 cilium assembly Biological Process GO:1905515 non-motile cilium assembly Biological Process GO:0005881 cytoplasmic microtubule Cellular Component GO:0005929 cilium Cellular Component GO:0005930 axoneme Cellular Component GO:0036064 ciliary basal body Cellular Component GO:0008017 microtubule binding Molecular Function |
| KEGG gene cross-reference | hsa:165186 hsa:23116 mmu:320159 mmu:328108 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF12348.15CLASP_N108-268 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_029004 | PF12348.15 | CLASP_N | 108 | 268 | 7.2e-07 | 29.7 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.