LXL04_028879 | RubberDandelionOmics

Gene overview

LXL04_028879

Reference: OH-1004 Chr: Chr06 Coordinates: 72733307-72734789 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

567 bp · LXL04_028879|LXL04_028879|OH1004|cDNA

ATGTCATCTGCTCTTACCCCCATCATCGTCGATTCAGTGGTCTCCGCCCCCATCATCGTCGATTCAGTGGTCTCCGCCCCCATCATCGTCGATTCGTTTGCTACGGGTAACCTAGACGCCGTCGTCACCTGTTCTCGACCACCGGACTGTTCTCGACCACCGCGTCTGTTCTCCATCGCAGCTTCAATCGCACCTGTTCAGCGCCTCCTTCCTTCGATTTCACAGGTTAGAATTCTAAACCCCGTGATTTCGCCACTGTC...

CDS

Download CDS FASTA

567 bp · LXL04_028879|LXL04_028879|OH1004|CDS

ATGTCATCTGCTCTTACCCCCATCATCGTCGATTCAGTGGTCTCCGCCCCCATCATCGTCGATTCAGTGGTCTCCGCCCCCATCATCGTCGATTCGTTTGCTACGGGTAACCTAGACGCCGTCGTCACCTGTTCTCGACCACCGGACTGTTCTCGACCACCGCGTCTGTTCTCCATCGCAGCTTCAATCGCACCTGTTCAGCGCCTCCTTCCTTCGATTTCACAGGTTAGAATTCTAAACCCCGTGATTTCGCCACTGTC...

Protein

Download Protein FASTA

188 aa · LXL04_028879|LXL04_028879|OH1004|PROTEIN

MSSALTPIIVDSVVSAPIIVDSVVSAPIIVDSFATGNLDAVVTCSRPPDCSRPPRLFSIAASIAPVQRLLPSISQVRILNPVISPLSCTRPTRLPLLMRTGMLKSNMCLYVEIEQALPYLYVPCSDIVHQPDQQGDECARVISLVLERALKLKSNAGSKRQHVHDCSLVRARRLYDYDASEQLKMFSK

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_028879`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_028879

Location Chr06:72733307-72734789 (-)

Description Similar to REV3: DNA polymerase zeta catalytic subunit

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g67500`	Catalytic subunit of the error prone DNA polymerase zeta.	Disruption of the AtREV3 gene causes hypersensitivity to ultraviolet B light and gamma-rays in Arabidopsis: implication of the presence of a translesion synthesis mechanism in plants.2003 · DOI: 10.1105/tpc.012369 Roles of Arabidopsis AtREV1 and AtREV7 in translesion synthesis.2005 · DOI: 10.1104/pp.105.060236 RAD5a and REV3 function in two alternative pathways of DNA-damage tolerance in Arabidopsis.2011 · DOI: 10.1016/j.dnarep.2011.04.009

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_028879 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000724 double-strand break repair via homologous recombination Biological Process

GO:0006281 DNA repair Biological Process

GO:0006974 DNA damage response Biological Process

GO:0009411 response to UV Biological Process

GO:0010224 response to UV-B Biological Process

GO:0042276 error-prone translesion synthesis Biological Process

GO:0071494 cellular response to UV-C Biological Process

GO:0005634 nucleus Cellular Component

GO:0016035 zeta DNA polymerase complex Cellular Component

GO:0000166 nucleotide binding Molecular Function

GO:0003677 DNA binding Molecular Function

GO:0003887 DNA-directed DNA polymerase activity Molecular Function

KEGG gene cross-reference

ath:AT1G67500

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.411

Rank 1 · LXL04_028879 · OH-1004

Nucleus0.405

Rank 2 · LXL04_028879 · OH-1004

Cell membrane0.126

Rank 3 · LXL04_028879 · OH-1004

Mitochondrion0.112

Rank 4 · LXL04_028879 · OH-1004

Endoplasmic reticulum0.094

Rank 5 · LXL04_028879 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24055.3POL3_N115-182 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_028879	`PF24055.3`	POL3_N	115	182	1.7e-12	48.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q766Z3`	Arabidopsis thaliana	DNA polymerase zeta catalytic subunit	52.000%	Swiss-Prot	weak database homology

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