Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1692 bp · LXL04_028756|LXL04_028756|OH1004|cDNA
ATGTTGATAATTCCTGTAAACAAAGGGATTCCGTTTAATGCCAATATCGTTTGATATGTATTAATACAAATTGGTAGCCGGGCCTCCAGAACCAGCCATTTAAAAATGGTTTTCACCACTTGCCCAATCTCCGTGGTAACGTCACCAAATTCTTCAGTTGTCTCTTACGTATCTCTCTCTCCCGGCCTCTCTAAGATCTCGGCGAAACCCACAATTGTTCGCGCCTCCATCAAGAGGACTAAACGCAGGCGAACTCACTC...
1587 bp · LXL04_028756|LXL04_028756|OH1004|CDS
ATGGTTTTCACCACTTGCCCAATCTCCGTGGTAACGTCACCAAATTCTTCAGTTGTCTCTTACGTATCTCTCTCTCCCGGCCTCTCTAAGATCTCGGCGAAACCCACAATTGTTCGCGCCTCCATCAAGAGGACTAAACGCAGGCGAACTCACTCCACTTCCACACCGTCGCCGCAAGGAGACATGTCAGTCACGGTTCCCATGCCAGCTGATGATGAGCCCTTTGTTAGTTCCAGAAACCGTGACGAGGCCCCTGAGGT...
Protein
Download Protein FASTA528 aa · LXL04_028756|LXL04_028756|OH1004|PROTEIN
MVFTTCPISVVTSPNSSVVSYVSLSPGLSKISAKPTIVRASIKRTKRRRTHSTSTPSPQGDMSVTVPMPADDEPFVSSRNRDEAPEVQKKKYSIGAIRCYGVDLTPDNCAVAMVYFVQGVLGLSRLAVSFYLKDDLHLDPAETAVITGFSALPWLIKPLYGFISDAVPLFGYRRRSYLVLSGLLGALSWSLMASFVDGKYGAALCILLGSLSVAFSDVVVDSMVVERARGETQSVSGSLQSLCWGSSAFGGIVSSYFSGS...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_028756 |
|---|---|
| TK1151 ID | TkA07G207880 |
| OH-1004 ID | LXL04_028756 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 93.783 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_028756 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr06:61202373-61205376 (-) | |||||||||
| Description | Similar to At2g32040: Folate-biopterin transporter 1, chloroplastic | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0015884 folic acid transport Biological Process GO:0015885 5-formyltetrahydrofolate transport Biological Process GO:0051958 methotrexate transport Biological Process GO:0098838 folate transmembrane transport Biological Process GO:0005634 nucleus Cellular Component GO:0005886 plasma membrane Cellular Component GO:0009507 chloroplast Cellular Component GO:0009941 chloroplast envelope Cellular Component GO:0016020 membrane Cellular Component GO:0031969 chloroplast membrane Cellular Component GO:0008517 folic acid transmembrane transporter activity Molecular Function GO:0015231 5-formyltetrahydrofolate transmembrane transporter activity Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT1G79710 ath:AT2G32040 pbe:PBANKA_0931500 pfa:PF3D7_1116500 syn:slr0642 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF03092.23BT1118-512 aaPF07690.22MFS_1126-467 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_028756 | PF03092.23 | BT1 | 118 | 512 | 1.2e-144 | 483.0 |
| LXL04_028756 | PF07690.22 | MFS_1 | 126 | 467 | 1.5e-17 | 64.3 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.