LXL04_028722 | RubberDandelionOmics

Gene overview

LXL04_028722

Reference: OH-1004 Chr: Chr06 Coordinates: 57037427-57041434 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1278 bp · LXL04_028722|LXL04_028722|OH1004|cDNA

ATGAAGCACATCTGTGATTGGGTTTTGATGGCGCTGATTGGATTCAGTCTATTGGGGAAATGGGCAAATGGCAGTGACTTCGATGATGCAGAGTTCCATCCTAATACAACACAAATGCTGTCATATTTAGAAAACTTTTCTAATTATTCACAATCTGCTGCGGTTTATAATCCTCTATACGTGGGTCTCACTCTCATTCCTGGGGCTGCAGCCAAAGGCGCCGTATGCTTGGATGGTACTTTACCTGGGTATCATTTACA...

CDS

Download CDS FASTA

1278 bp · LXL04_028722|LXL04_028722|OH1004|CDS

ATGAAGCACATCTGTGATTGGGTTTTGATGGCGCTGATTGGATTCAGTCTATTGGGGAAATGGGCAAATGGCAGTGACTTCGATGATGCAGAGTTCCATCCTAATACAACACAAATGCTGTCATATTTAGAAAACTTTTCTAATTATTCACAATCTGCTGCGGTTTATAATCCTCTATACGTGGGTCTCACTCTCATTCCTGGGGCTGCAGCCAAAGGCGCCGTATGCTTGGATGGTACTTTACCTGGGTATCATTTACA...

Protein

Download Protein FASTA

425 aa · LXL04_028722|LXL04_028722|OH1004|PROTEIN

MKHICDWVLMALIGFSLLGKWANGSDFDDAEFHPNTTQMLSYLENFSNYSQSAAVYNPLYVGLTLIPGAAAKGAVCLDGTLPGYHLHRGFGAGANSWLVHLEGGGWCNSIRTCVYRKTTRRGSSHYFEKYLAFTGILSNRAEENPDFFNWNRVKVRYCDGASFTGDSEDRAHGLQFRGQKIWLAAMEELMSKGMRYANQALLSGCSAGGLASILHCDEFRGLFRRRTKVKCFADAGMFLDARDVSGGHTLRNMYQGVVSL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_028722`
TK1151 ID	TkA07G194810
OH-1004 ID	LXL04_028722
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_028722

Location Chr06:57037427-57041434 (-)

Description Similar to PAE12: Pectin acetylesterase 12

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g05910`	Hydrolyzes acetyl esters in homogalacturonan regions of pectin.	No verified direct reference in this release
`At5g26670`	Hydrolyzes acetyl esters in homogalacturonan regions of pectin.	No verified direct reference in this release
`At3g62060`	Hydrolyzes acetyl esters in homogalacturonan regions of pectin.	No verified direct reference in this release
`At2g46930`	Hydrolyzes acetyl esters in homogalacturonan regions of pectin.	No verified direct reference in this release
`At1g57590`	Hydrolyzes acetyl esters in homogalacturonan regions of pectin.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_028722 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009625 response to insect Biological Process

GO:0071555 cell wall organization Biological Process

GO:0005576 extracellular region Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0052793 pectin acetylesterase activity Molecular Function

KEGG gene cross-reference

ath:AT1G57590

ath:AT2G46930

ath:AT3G05910

ath:AT3G62060

ath:AT5G26670

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.336

Rank 1 · LXL04_028722 · OH-1004

Extracellular0.327

Rank 2 · LXL04_028722 · OH-1004

Golgi apparatus0.130

Rank 3 · LXL04_028722 · OH-1004

Cytoplasm0.108

Rank 4 · LXL04_028722 · OH-1004

Cell membrane0.101

Rank 5 · LXL04_028722 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03283.20PAE58-419 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_028722	`PF03283.20`	PAE	58	419	3.2e-170	566.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SFF6`	Arabidopsis thaliana	Pectin acetylesterase 12	67.225%	Swiss-Prot	strong database homology
`Q66GM8`	Arabidopsis thaliana	Pectin acetylesterase 10	66.587%	Swiss-Prot	strong database homology
`Q84JS1`	Arabidopsis thaliana	Pectin acetylesterase 6	71.507%	Swiss-Prot	strong database homology
`O80731`	Arabidopsis thaliana	Pectin acetylesterase 3	68.852%	Swiss-Prot	strong database homology
`F4I839`	Arabidopsis thaliana	Pectin acetylesterase 2	70.879%	Swiss-Prot	strong database homology

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