Gene Card
Gene overview
cDNA / CDS / Protein Sequences
981 bp · LXL04_028716|LXL04_028716|OH1004|cDNA
ATGCCAGCCTCAGGCGATATTGCAAAGCGTGTTGCAAATACTGAGACTGAGCATTTTGCTAGGGAAGACAATGAAAATGAGAGACTGGTAGTATCTAGTGACCAAGAGATCAAAGTTGAAGATGATGTGGCACACCCTCAAACAGAAGGGAGTGAAAGGTCATGGAAATGGTGGATTAAGGTTACAGTATGGTCCATTGTTACTATCGTAGGTTCCATCGTTTTAATGAAATGGGTAATGCCATTTATATTTGAGAAGAT...
981 bp · LXL04_028716|LXL04_028716|OH1004|CDS
ATGCCAGCCTCAGGCGATATTGCAAAGCGTGTTGCAAATACTGAGACTGAGCATTTTGCTAGGGAAGACAATGAAAATGAGAGACTGGTAGTATCTAGTGACCAAGAGATCAAAGTTGAAGATGATGTGGCACACCCTCAAACAGAAGGGAGTGAAAGGTCATGGAAATGGTGGATTAAGGTTACAGTATGGTCCATTGTTACTATCGTAGGTTCCATCGTTTTAATGAAATGGGTAATGCCATTTATATTTGAGAAGAT...
Protein
Download Protein FASTA326 aa · LXL04_028716|LXL04_028716|OH1004|PROTEIN
MPASGDIAKRVANTETEHFAREDNENERLVVSSDQEIKVEDDVAHPQTEGSERSWKWWIKVTVWSIVTIVGSIVLMKWVMPFIFEKILLPMMEWEATTFGRPALALILVASLALFPIVFLPSSPSMWVAGMIFGYYLGFVIIMVGTTIGMVLPYLIGLFFRDTIHRWLKRWPRTTAMITMAGEGDAFQQFRVVALFRISPFPYTIFNYAIVVTSIMFWPYLLGSIAGMIPEAFIYIYSGKLLRTFANVQYGNHEMSLPEI...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_028716 |
|---|---|
| TK1151 ID | TkA07G194130 |
| OH-1004 ID | LXL04_028716 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_028716 |
|---|---|
| Location | Chr06:56887349-56888597 (-) |
| Description | Similar to slr0305: TVP38/TMEM64 family membrane protein slr0305 (Synechocystis sp. (strain PCC 6803 / Kazusa) |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0000022 mitotic spindle elongation Biological Process GO:0016192 vesicle-mediated transport Biological Process GO:0043462 regulation of ATP-dependent activity Biological Process GO:0051480 regulation of cytosolic calcium ion concentration Biological Process GO:0090090 negative regulation of canonical Wnt signaling pathway Biological Process GO:0000139 Golgi membrane Cellular Component GO:0005783 endoplasmic reticulum Cellular Component GO:0005886 plasma membrane Cellular Component GO:0016020 membrane Cellular Component |
| KEGG gene cross-reference | ani:ANIA_03579 bfu:BCIN_01g07600 hsa:169200 mmu:100201 syn:slr0305 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF09335.17VTT_dom120-240 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_028716 | PF09335.17 | VTT_dom | 120 | 240 | 2.2e-18 | 67.6 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.