LXL04_028696 | RubberDandelionOmics

Gene overview

LXL04_028696

Reference: OH-1004 Chr: Chr06 Coordinates: 55422265-55424323 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

915 bp · LXL04_028696|LXL04_028696|OH1004|cDNA

ATGGAATCAAACATACCACCGCCTAAGATGGGAACCGACGAGAAACAAGTAAGAGAAGACGGAAATCATAAGAATACTTCTCACTACAAAGCACAAGATACCCGCCGTGCAGGGCCGCGGCGCTTCCTTCTTGATTTCGCATTTGCACGGGATGGACCGGTAGCAAGAAGCCTATTAGCCCAATTAATATACATGCCCATAAGAGACTTTCAAAGTTTGATGCCCCATAAAGAAGTGATGCCCTGGGCCATGGCCCAGCT...

CDS

Download CDS FASTA

915 bp · LXL04_028696|LXL04_028696|OH1004|CDS

ATGGAATCAAACATACCACCGCCTAAGATGGGAACCGACGAGAAACAAGTAAGAGAAGACGGAAATCATAAGAATACTTCTCACTACAAAGCACAAGATACCCGCCGTGCAGGGCCGCGGCGCTTCCTTCTTGATTTCGCATTTGCACGGGATGGACCGGTAGCAAGAAGCCTATTAGCCCAATTAATATACATGCCCATAAGAGACTTTCAAAGTTTGATGCCCCATAAAGAAGTGATGCCCTGGGCCATGGCCCAGCT...

Protein

Download Protein FASTA

304 aa · LXL04_028696|LXL04_028696|OH1004|PROTEIN

MESNIPPPKMGTDEKQVREDGNHKNTSHYKAQDTRRAGPRRFLLDFAFARDGPVARSLLAQLIYMPIRDFQSLMPHKEVMPWAMAQLALGLGRPCRRAISTIIVVIIILAGITAGVLWIVYHPHKPKFTVISAAVYALNVSSPPYISITMQFTIVTRNPNNHVSIYYDHLAAFLFYKNQAVTTPLVLPPLYHERDSTVSFSPILGGGSMAVSADVVNGLGADESYGVVSFGLVLTGKLRWKYGDIRSGRKAIHVGCDVSV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_028696`
TK1151 ID	TkA07G189610
OH-1004 ID	LXL04_028696
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	78.900
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_028696

Location Chr06:55422265-55424323 (-)

Description Similar to NHL1: NDR1/HIN1-like protein 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g11660`	May play a role in plant immunity.	No verified direct reference in this release
`At2g35960`	May play a role in plant immunity.	No verified direct reference in this release
`At5g53730`	Involved in the regulation of sugar, amino acid and some primary metabolite export from companion cells (CCs) to sieve elements (SEs) in phloem.	Increased expression of a phloem membrane protein encoded by NHL26 alters phloem export and sugar partitioning in Arabidopsis.2013 · DOI: 10.1105/tpc.113.111849
`At2g27080`	Required for plant immunity against the bacterial pathogen Pseudomonas syringae pv. tomato DC3000 (Pst DC3000).	Pseudomonas syringae Effector Avirulence Protein E Localizes to the Host Plasma Membrane and Down-Regulates the Expression of the NONRACE-SPECIFIC DISEASE RESISTANCE1/HARPIN-INDUCED1-LIKE13 Gene Required for Antibacterial Immunity in Arabidopsis.2015 · DOI: 10.1104/pp.15.00547
`At2g35980`	May play a role in plant immunity.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_028696 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0010150 leaf senescence Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0051607 defense response to virus Biological Process

GO:0051707 response to other organism Biological Process

GO:0098542 defense response to other organism Biological Process

GO:0110126 phloem loading Biological Process

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

KEGG gene cross-reference

ath:AT2G27080

ath:AT2G35960

ath:AT2G35980

ath:AT3G11660

ath:AT5G53730

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.568

Rank 1 · LXL04_028696 · OH-1004

Endoplasmic reticulum0.161

Rank 2 · LXL04_028696 · OH-1004

Cytoplasm0.136

Rank 3 · LXL04_028696 · OH-1004

Lysosome / Vacuole0.123

Rank 4 · LXL04_028696 · OH-1004

Extracellular0.102

Rank 5 · LXL04_028696 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SRN0`	Arabidopsis thaliana	NDR1/HIN1-like protein 1	34.969%	Swiss-Prot	moderate database homology
`Q9SJ54`	Arabidopsis thaliana	NDR1/HIN1-like protein 12	33.793%	Swiss-Prot	weak database homology
`Q9FI03`	Arabidopsis thaliana	NDR1/HIN1-like protein 26	32.168%	Swiss-Prot	weak database homology
`Q9ZVD2`	Arabidopsis thaliana	NDR1/HIN1-like protein 13	25.000%	Swiss-Prot	weak database homology
`Q9SJ52`	Arabidopsis thaliana	NDR1/HIN1-like protein 10	27.011%	Swiss-Prot	weak database homology

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