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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp

Gene overview

LXL04_028656
Reference: OH-1004 Chr: Chr06 Coordinates: 52278807-52284000 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

684 bp · LXL04_028656|LXL04_028656|OH1004|cDNA

ATGAAGGAGTTCAAAAGACCGGCGCTTCCTTGGCTGATCTCGCTGGACACAACGATGGAGAAAGGAACAGAGAAAGAAGGCTTACCGGACAGCAATGGAGGTGGTGGTCGCCGATCTGCAGCCAACCCAGCAAAGAAGAGGTTGCCGGCGGGAGCACTTCTTGGCAGCGGACTGTGTTCGGAGCTCATGAGGAGGGTAGCCTCCCGCTTGACCGATTTATCGGAGTCGGAGGAAGATCTCTCATCCGATCATCCTGAACA...

684 bp · LXL04_028656|LXL04_028656|OH1004|CDS

ATGAAGGAGTTCAAAAGACCGGCGCTTCCTTGGCTGATCTCGCTGGACACAACGATGGAGAAAGGAACAGAGAAAGAAGGCTTACCGGACAGCAATGGAGGTGGTGGTCGCCGATCTGCAGCCAACCCAGCAAAGAAGAGGTTGCCGGCGGGAGCACTTCTTGGCAGCGGACTGTGTTCGGAGCTCATGAGGAGGGTAGCCTCCCGCTTGACCGATTTATCGGAGTCGGAGGAAGATCTCTCATCCGATCATCCTGAACA...

227 aa · LXL04_028656|LXL04_028656|OH1004|PROTEIN

MKEFKRPALPWLISLDTTMEKGTEKEGLPDSNGGGGRRSAANPAKKRLPAGALLGSGLCSELMRRVASRLTDLSESEEDLSSDHPEHEGAALDSWLCRTKRKALFVALDKIKEENRKRTYSDCYLRCDHGGIAQGLMSSIQILSFFRYAAPRARSEKTKWAVVMSEFAPIFIYLVISPLVSLIPLGVPFTFASNSSNYPEKLSAYECGFDHFGDVYITCRLFLIRLE

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_028656
Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_028656
LocationChr06:52278807-52284000 (-)
DescriptionSimilar to NAD3: NADH-ubiquinone oxidoreductase chain 3
Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_028656 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0022904 respiratory electron transport chain Biological Process
GO:0030964 NADH dehydrogenase complex Cellular Component
GO:0031966 mitochondrial membrane Cellular Component
GO:0008137 NADH dehydrogenase (ubiquinone) activity Molecular Function
GO:0016651 oxidoreductase activity, acting on NAD(P)H Molecular Function
KEGG gene cross-reference
rsz:13630152
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.364
Rank 1 · LXL04_028656 · OH-1004
Cytoplasm0.348
Rank 2 · LXL04_028656 · OH-1004
Mitochondrion0.184
Rank 3 · LXL04_028656 · OH-1004
Cell membrane0.153
Rank 4 · LXL04_028656 · OH-1004
Endoplasmic reticulum0.100
Rank 5 · LXL04_028656 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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