LXL04_028548 | RubberDandelionOmics

Gene overview

LXL04_028548

Reference: OH-1004 Chr: Chr06 Coordinates: 45357771-45358583 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

540 bp · LXL04_028548|LXL04_028548|OH1004|cDNA

ATGGATGCTTACGATCATCATCAAATGTCTAAAGCCTACAGTTACATATCTGAAGACTCACCTGATATCGATTATGATGTTCCAAACCAGCAAAGTTCTGAGTTTATTGAGGGCTTTCTCAGCTTTGATGATTGGATAACTGAAGATCAAGCTTCCATTGTTCCTGAATATCAAGATCGGACTCCCGTTAACCCTTCTGCAATTGAAGATGGTAGATTGTCAATCGGAAGTAGTAGCAGCAGTGGGCATCTTCATGGCAG...

CDS

Download CDS FASTA

540 bp · LXL04_028548|LXL04_028548|OH1004|CDS

ATGGATGCTTACGATCATCATCAAATGTCTAAAGCCTACAGTTACATATCTGAAGACTCACCTGATATCGATTATGATGTTCCAAACCAGCAAAGTTCTGAGTTTATTGAGGGCTTTCTCAGCTTTGATGATTGGATAACTGAAGATCAAGCTTCCATTGTTCCTGAATATCAAGATCGGACTCCCGTTAACCCTTCTGCAATTGAAGATGGTAGATTGTCAATCGGAAGTAGTAGCAGCAGTGGGCATCTTCATGGCAG...

Protein

Download Protein FASTA

179 aa · LXL04_028548|LXL04_028548|OH1004|PROTEIN

MDAYDHHQMSKAYSYISEDSPDIDYDVPNQQSSEFIEGFLSFDDWITEDQASIVPEYQDRTPVNPSAIEDGRLSIGSSSSSGHLHGSDCRGTGFGQAQKGKKDKVAFKTKSQVEILDDGFKWRKYGKKMVKNNPNPRNYYRCSAAGCSVKKRVERDVEDVRYVITTYEGIHNHRRPSNY

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_028548`
TK1151 ID	TkA07G169020
OH-1004 ID	LXL04_028548
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_028548

Location Chr06:45357771-45358583 (+)

Description Similar to WRKY50: Probable WRKY transcription factor 50

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g26170`	Transcription factor.	No verified direct reference in this release
`At5g64810`	Transcription factor.	Low oleic acid-derived repression of jasmonic acid-inducible defense responses requires the WRKY50 and WRKY51 proteins.2011 · DOI: 10.1104/pp.110.166876
`At4g18170`	Transcription factor.	No verified direct reference in this release
`At2g44745`	Transcription factor.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: Q6B6R4`	Transcription repressor (By similarity).	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_028548 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009740 gibberellic acid mediated signaling pathway Biological Process

GO:0009753 response to jasmonic acid Biological Process

GO:0009788 negative regulation of abscisic acid-activated signaling pathway Biological Process

GO:0009832 plant-type cell wall biogenesis Biological Process

GO:0009867 jasmonic acid mediated signaling pathway Biological Process

GO:0009938 negative regulation of gibberellic acid mediated signaling pathway Biological Process

GO:0042659 regulation of cell fate specification Biological Process

GO:0042742 defense response to bacterium Biological Process

KEGG gene cross-reference

ath:AT2G44745

ath:AT4G18170

ath:AT5G26170

ath:AT5G64810

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.968

Rank 1 · LXL04_028548 · OH-1004

Cytoplasm0.101

Rank 2 · LXL04_028548 · OH-1004

Cell membrane0.026

Rank 3 · LXL04_028548 · OH-1004

Endoplasmic reticulum0.017

Rank 4 · LXL04_028548 · OH-1004

Plastid0.011

Rank 5 · LXL04_028548 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03106.22WRKY117-173 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_028548	`PF03106.22`	WRKY	117	173	3e-24	85.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8VWQ5`	Arabidopsis thaliana	Probable WRKY transcription factor 50	48.344%	Swiss-Prot	moderate database homology
`Q93WU9`	Arabidopsis thaliana	Probable WRKY transcription factor 51	52.941%	Swiss-Prot	moderate database homology
`Q8VWJ2`	Arabidopsis thaliana	WRKY transcription factor 28	56.627%	Swiss-Prot	weak database homology
`Q93WY4`	Arabidopsis thaliana	Probable WRKY transcription factor 12	61.842%	Swiss-Prot	weak database homology
`Q6B6R4`	Oryza sativa subsp. indica	WRKY transcription factor WRKY24	58.442%	Swiss-Prot	weak database homology

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