Gene Card
Gene overview
cDNA / CDS / Protein Sequences
936 bp · LXL04_028526|LXL04_028526|OH1004|cDNA
ATGGTGGCCTCTTGCATCAGCTTCGTCTCCTTGTACGGCTCCTTCCTCCGCCGTTCCCTCACTGCATCAGGCCTCTGCCCCCAATCTGTCGACGTCGATGCTTACACCACCATCCACTATTGGGGACCTAAACCACAGCCAGCTTCCACCGTTTCCCCATCCTCAAATGGTGACCATCGGAAATCATCGCTGGTTTTAATTCACGGATTCGGTCCTCACGGTGTTTGGCAGTGGCGGCAACAGGTGTCGTTTCTTGCGCC...
936 bp · LXL04_028526|LXL04_028526|OH1004|CDS
ATGGTGGCCTCTTGCATCAGCTTCGTCTCCTTGTACGGCTCCTTCCTCCGCCGTTCCCTCACTGCATCAGGCCTCTGCCCCCAATCTGTCGACGTCGATGCTTACACCACCATCCACTATTGGGGACCTAAACCACAGCCAGCTTCCACCGTTTCCCCATCCTCAAATGGTGACCATCGGAAATCATCGCTGGTTTTAATTCACGGATTCGGTCCTCACGGTGTTTGGCAGTGGCGGCAACAGGTGTCGTTTCTTGCGCC...
Protein
Download Protein FASTA311 aa · LXL04_028526|LXL04_028526|OH1004|PROTEIN
MVASCISFVSLYGSFLRRSLTASGLCPQSVDVDAYTTIHYWGPKPQPASTVSPSSNGDHRKSSLVLIHGFGPHGVWQWRQQVSFLAPYFDVYVPDLVFFGESITKSSERSEIFQASAVGKMMEKVGVSKYSVVGTSYGGFVAYRMAEMWPERVEKVVIASSGVNMRPRDNQELIKRANVKKIDELMLPETAGQLRSLFRLAVINHVYMPDFFLNDFIDKLYSENRKEKLELLKGLVLGQHETPNISPLQQEVLIIWGDED...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_028526 |
|---|---|
| TK1151 ID | TkAUNG053700 |
| OH-1004 ID | LXL04_028526 |
| Relationship / confidence | Multi Source To Oh1004 / Complex relationship |
| Protein identity (%) | 99.000 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_028526 |
|---|---|
| Location | Chr06:44514405-44516442 (+) |
| Description | Similar to mhpC: 2-hydroxy-6-oxononadienedioate/2-hydroxy-6-oxononatrienedioate hydrolase (Paraburkholderia phymatum (strain DSM 17167 / CIP 108236 / LMG 21445 / STM815) |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006694 steroid biosynthetic process Biological Process GO:0016042 lipid catabolic process Biological Process GO:0019380 3-phenylpropionate catabolic process Biological Process GO:0051701 biological process involved in interaction with host Biological Process GO:0005737 cytoplasm Cellular Component GO:0005886 plasma membrane Cellular Component GO:0016020 membrane Cellular Component GO:0016787 hydrolase activity Molecular Function GO:0016823 hydrolase activity, acting on carbon-carbon bonds, in ketonic substances Molecular Function GO:0018771 2-hydroxy-6-oxonona-2,4-dienedioate hydrolase activity Molecular Function GO:0018774 2,6-dioxo-6-phenylhexa-3-enoate hydrolase activity Molecular Function GO:0042803 protein homodimerization activity Molecular Function |
| KEGG gene cross-reference | bph:Bphy_4541 bvi:Bcep1808_5382 mtc:MT3674 mtu:Rv3569c mtv:RVBD_3569c rha:RHA1_ro04540 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF12146.16Hydrolase_459-294 aaPF00561.27Abhydrolase_164-294 aaPF12697.14Abhydrolase_664-300 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_028526 | PF12146.16 | Hydrolase_4 | 59 | 294 | 3.1e-09 | 37.2 |
| LXL04_028526 | PF00561.27 | Abhydrolase_1 | 64 | 294 | 6.5e-21 | 75.8 |
| LXL04_028526 | PF12697.14 | Abhydrolase_6 | 64 | 300 | 4.5e-14 | 54.3 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.