LXL04_028490 | RubberDandelionOmics

Gene overview

LXL04_028490

Reference: OH-1004 Chr: Chr06 Coordinates: 43487155-43489748 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1296 bp · LXL04_028490|LXL04_028490|OH1004|cDNA

ATGGCTGGGGTGCAAATGAGCCGAAGCAGCTCGCTAAAAGCTCGCTACCCGCTCGCTAAAAGCTCGGCTCGAGATCAGACTAGGGTTAAGGTATCCAGTATCCCGCTTGAATCGTATTTCGCCTCATCCCTCAGATTCAGATCCTCACTCACCCACGCAGCCATCGCCGACTCAACCCTTCTTCTCCGACTATCGGCCAGCGCCTCAGGGCTCCGTCAATCGTCATCCACCTCCAGCTCCCGCTTGAATCGTATTTCGTC...

CDS

Download CDS FASTA

1296 bp · LXL04_028490|LXL04_028490|OH1004|CDS

ATGGCTGGGGTGCAAATGAGCCGAAGCAGCTCGCTAAAAGCTCGCTACCCGCTCGCTAAAAGCTCGGCTCGAGATCAGACTAGGGTTAAGGTATCCAGTATCCCGCTTGAATCGTATTTCGCCTCATCCCTCAGATTCAGATCCTCACTCACCCACGCAGCCATCGCCGACTCAACCCTTCTTCTCCGACTATCGGCCAGCGCCTCAGGGCTCCGTCAATCGTCATCCACCTCCAGCTCCCGCTTGAATCGTATTTCGTC...

Protein

Download Protein FASTA

431 aa · LXL04_028490|LXL04_028490|OH1004|PROTEIN

MAGVQMSRSSSLKARYPLAKSSARDQTRVKVSSIPLESYFASSLRFRSSLTHAAIADSTLLLRLSASASGLRQSSSTSSSRLNRISSHPSDPHSRTQLFSPTIGCGGRISTFLNRRCGGRISTFLSLMGGTSVEPLAQSVDGSTTNQMEGIEVEEQSAPKPAPPNQNPSEDATDKDQMEEEVILKRKRKKTSKIWDQFTIVKGVSTQKYQALCMYCKSKIYYDGTTSTCIRHLQSCKPHTDHIQKQQLLKFPPSVSSIDS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_028490`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_028490

Location Chr06:43487155-43489748 (+)

Description Similar to Putative AC9 transposase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g42170`	Transposase-like protein that is essential for plant growth and development.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0733400`	Transposase-like protein that is essential for plant growth and development.	No verified direct reference in this release
`Os05g0239150`	Transposase-like protein that is essential for plant growth and development.	No verified direct reference in this release
`Os01g0518400`	Transposase-like protein that is essential for plant growth and development.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_028490 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006310 DNA recombination Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0009791 post-embryonic development Biological Process

GO:0032196 transposition Biological Process

GO:0005634 nucleus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0003677 DNA binding Molecular Function

GO:0008270 zinc ion binding Molecular Function

GO:0046983 protein dimerization activity Molecular Function

KEGG gene cross-reference

ath:AT3G42170

dosa:Os01g0518400

dosa:Os03g0733400

dosa:Os05g0239150

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.916

Rank 1 · LXL04_028490 · OH-1004

Cytoplasm0.118

Rank 2 · LXL04_028490 · OH-1004

Cell membrane0.026

Rank 3 · LXL04_028490 · OH-1004

Mitochondrion0.024

Rank 4 · LXL04_028490 · OH-1004

Endoplasmic reticulum0.018

Rank 5 · LXL04_028490 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02892.22zf-BED192-236 aa

PF27041.1ZBED1_RNase-like349-430 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_028490	`PF02892.22`	zf-BED	192	236	1.8e-06	28.6
LXL04_028490	`PF27041.1`	ZBED1_RNase-like	349	430	4.4e-28	98.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9M2N5`	Arabidopsis thaliana	Zinc finger BED domain-containing protein DAYSLEEPER	25.177%	Swiss-Prot	weak database homology
`Q6AVI0`	Oryza sativa subsp. japonica	Zinc finger BED domain-containing protein RICESLEEPER 2	27.953%	Swiss-Prot	weak database homology
`B9FJG3`	Oryza sativa subsp. japonica	Zinc finger BED domain-containing protein RICESLEEPER 1	27.953%	Swiss-Prot	weak database homology
`Q0JMB2`	Oryza sativa subsp. japonica	Zinc finger BED domain-containing protein RICESLEEPER 4	27.386%	Swiss-Prot	weak database homology

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