LXL04_028440 | RubberDandelionOmics

Gene overview

LXL04_028440

Reference: OH-1004 Chr: Chr06 Coordinates: 41780571-41782872 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1200 bp · LXL04_028440|LXL04_028440|OH1004|cDNA

ATGCCAAGACCCTTTCGTGTTTATGCGAATTGCATTTGGGACTTGAACTGTGGCATGAAAGATATGCAGATTTTGCATCCACCTCGGCAACGCCCTCATTTAAAGAAACCCAAATGGATTATCATATTGGTTTCACTGGTTTGCATGTTCTTAGTTATCGCGTACATTTATCCACCTCGAGACTCTACCGCCTGCTATATTTATTCGTCTTCTAGCTGTAAAACCATTGCCAGCTGGCTTCCACCTCCAGCAAGACAACT...

CDS

Download CDS FASTA

1200 bp · LXL04_028440|LXL04_028440|OH1004|CDS

ATGCCAAGACCCTTTCGTGTTTATGCGAATTGCATTTGGGACTTGAACTGTGGCATGAAAGATATGCAGATTTTGCATCCACCTCGGCAACGCCCTCATTTAAAGAAACCCAAATGGATTATCATATTGGTTTCACTGGTTTGCATGTTCTTAGTTATCGCGTACATTTATCCACCTCGAGACTCTACCGCCTGCTATATTTATTCGTCTTCTAGCTGTAAAACCATTGCCAGCTGGCTTCCACCTCCAGCAAGACAACT...

Protein

Download Protein FASTA

399 aa · LXL04_028440|LXL04_028440|OH1004|PROTEIN

MPRPFRVYANCIWDLNCGMKDMQILHPPRQRPHLKKPKWIIILVSLVCMFLVIAYIYPPRDSTACYIYSSSSCKTIASWLPPPARQLTDEEIASRVVIKNILNNPSIETKNPKIAFMFLSPGSLPFERLWDKFFQGHEGRFSIHIHASKVKPVHHSHLFQNREIRSDKVDWGKISMVDAEKRLLANALKDPDNQHFVLLSDSCVPLRSFEYVYNYLIYTNVSFIDSFEDPGPHGSGRYSNHMLPEVEKKFFRKGAQWFTM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_028440`
TK1151 ID	TkA07G156200
OH-1004 ID	LXL04_028440
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.700
Protein coverage (%)	TK1151 100.000 / OH-1004 95.489 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_028440

Location Chr06:41780571-41782872 (-)

Description Similar to BC10: Glycosyltransferase BC10

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

No hit for this species in the current source table.

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0170000`	Glycosyltransferase required for the regulation of cellulose biosynthesis in the cell wall.	BC10, a DUF266-containing and Golgi-located type II membrane protein, is required for cell-wall biosynthesis in rice (Oryza sativa L.).2009 · DOI: 10.1111/j.1365-313x.2008.03703.x A Novel FC116/BC10 Mutation Distinctively Causes Alteration in the Expression of the Genes for Cell Wall Polymer Synthesis in Rice.2016 · DOI: 10.3389/fpls.2016.01366

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_028440 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009664 plant-type cell wall organization Biological Process

GO:0030244 cellulose biosynthetic process Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0016757 glycosyltransferase activity Molecular Function

KEGG gene cross-reference

dosa:Os05g0170000

osa:4337935

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.759

Rank 1 · LXL04_028440 · OH-1004

Endoplasmic reticulum0.085

Rank 2 · LXL04_028440 · OH-1004

Cell membrane0.079

Rank 3 · LXL04_028440 · OH-1004

Cytoplasm0.077

Rank 4 · LXL04_028440 · OH-1004

Lysosome / Vacuole0.051

Rank 5 · LXL04_028440 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02485.28Branch114-343 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_028440	`PF02485.28`	Branch	114	343	7.1e-80	268.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q65XS5`	Oryza sativa subsp. japonica	Glycosyltransferase BC10	35.669%	Swiss-Prot	moderate database homology

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