LXL04_028376 | RubberDandelionOmics

Gene overview

LXL04_028376

Reference: OH-1004 Chr: Chr06 Coordinates: 39373679-39377142 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2232 bp · LXL04_028376|LXL04_028376|OH1004|cDNA

ATGAATGCTTGTTCATCTCTTCCTGTGTTTACAGATAAAGAAATCGAGAAAGGATCTCAATCTATGGAGCTGCAAATCGATGCCGATGGCACACCACCGCTGTCGGTGCTTGCTACTGCAAAGCTTGCAGCTGTTTCTCTGACCGTCAATCGTACATTCTCCTCCCCCTCTCCGCCCGTTCTTGTCCTAACCAACGGGCTGAAGTTACGTGGAACAAATGTACTTCTCAAGTATCTTGGTCGTACATCAACAGCCATTCC...

CDS

Download CDS FASTA

2232 bp · LXL04_028376|LXL04_028376|OH1004|CDS

ATGAATGCTTGTTCATCTCTTCCTGTGTTTACAGATAAAGAAATCGAGAAAGGATCTCAATCTATGGAGCTGCAAATCGATGCCGATGGCACACCACCGCTGTCGGTGCTTGCTACTGCAAAGCTTGCAGCTGTTTCTCTGACCGTCAATCGTACATTCTCCTCCCCCTCTCCGCCCGTTCTTGTCCTAACCAACGGGCTGAAGTTACGTGGAACAAATGTACTTCTCAAGTATCTTGGTCGTACATCAACAGCCATTCC...

Protein

Download Protein FASTA

743 aa · LXL04_028376|LXL04_028376|OH1004|PROTEIN

MNACSSLPVFTDKEIEKGSQSMELQIDADGTPPLSVLATAKLAAVSLTVNRTFSSPSPPVLVLTNGLKLRGTNVLLKYLGRTSTAIPNLYQRDAYETGQIDEWLEYAPIFSSGSEYEGACKYVDGYLLHRTFLVGHSLSVADITIWSYLAGAGKRWESLMKSKKYQNLTRWYTTISTEHAAVLNELTSTLSKKKDSSNPISSTKQKDDSNQKHIPNGSVSSNRPEVDLPHAEMGKVCLRFAPEPSGYLHIGHSKAALMNQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_028376`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_028376

Location Chr06:39373679-39377142 (-)

Description Similar to At5g26710: Glutamate--tRNA ligase, cytoplasmic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g26710`	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_028376 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0002181 cytoplasmic translation Biological Process

GO:0006418 tRNA aminoacylation for protein translation Biological Process

GO:0006424 glutamyl-tRNA aminoacylation Biological Process

GO:0006431 methionyl-tRNA aminoacylation Biological Process

GO:0006433 prolyl-tRNA aminoacylation Biological Process

GO:0009791 post-embryonic development Biological Process

GO:0017148 negative regulation of translation Biological Process

GO:0032869 cellular response to insulin stimulus Biological Process

GO:0048608 reproductive structure development Biological Process

GO:0071346 cellular response to type II interferon Biological Process

GO:0140212 regulation of long-chain fatty acid import into cell Biological Process

GO:1901194 negative regulation of formation of translation preinitiation complex Biological Process

KEGG gene cross-reference

ath:AT5G26710

hsa:2058

mmu:107508

sce:YGL245W

spo:2542408

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.543

Rank 1 · LXL04_028376 · OH-1004

Nucleus0.386

Rank 2 · LXL04_028376 · OH-1004

Mitochondrion0.195

Rank 3 · LXL04_028376 · OH-1004

Peroxisome0.033

Rank 4 · LXL04_028376 · OH-1004

Plastid0.026

Rank 5 · LXL04_028376 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00749.28tRNA-synt_1c235-539 aa

PF03950.24tRNA-synt_1c_C542-631 aa

PF20974.3tRNA-synt_1c_C2646-719 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_028376	`PF00749.28`	tRNA-synt_1c	235	539	5e-102	341.7
LXL04_028376	`PF03950.24`	tRNA-synt_1c_C	542	631	1.8e-17	64.0
LXL04_028376	`PF20974.3`	tRNA-synt_1c_C2	646	719	4.4e-14	53.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O82462`	Arabidopsis thaliana	Glutamate--tRNA ligase, cytoplasmic	69.209%	Swiss-Prot	strong database homology

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