LXL04_028327 | RubberDandelionOmics

Gene overview

LXL04_028327

Reference: OH-1004 Chr: Chr06 Coordinates: 37866403-37869734 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2622 bp · LXL04_028327|LXL04_028327|OH1004|cDNA

ATGTGTTGTAGTCGCGTTAGGGTTTTTGGCGAATCATTAGTGGAAATTGAGGATACAGAAGTCGAAATGGACAGCCCTACTGCACGAACTACCCCTCCAGATTCAGTTCCTACTTCGAATGAGGATTATCCTCGGTTAAAGTTTTTGTGTAGCTTCAACGGCAGCATACTGCCTCGTCCACAAGATGGGAAGCTTAGATACGTTGGTGGGGAGACACGGATCGTGAGTGTTCCAAGAGATATTAGTTTTGAAGAACTAAT...

CDS

Download CDS FASTA

2622 bp · LXL04_028327|LXL04_028327|OH1004|CDS

ATGTGTTGTAGTCGCGTTAGGGTTTTTGGCGAATCATTAGTGGAAATTGAGGATACAGAAGTCGAAATGGACAGCCCTACTGCACGAACTACCCCTCCAGATTCAGTTCCTACTTCGAATGAGGATTATCCTCGGTTAAAGTTTTTGTGTAGCTTCAACGGCAGCATACTGCCTCGTCCACAAGATGGGAAGCTTAGATACGTTGGTGGGGAGACACGGATCGTGAGTGTTCCAAGAGATATTAGTTTTGAAGAACTAAT...

Protein

Download Protein FASTA

873 aa · LXL04_028327|LXL04_028327|OH1004|PROTEIN

MCCSRVRVFGESLVEIEDTEVEMDSPTARTTPPDSVPTSNEDYPRLKFLCSFNGSILPRPQDGKLRYVGGETRIVSVPRDISFEELMGKMKEMFEGANVLKYQQPDEDLDALVSVVNDDDVTNMMEDYEKLGSGDGFTRLRIFLFSSIEQDDPVHFVDRDERDTERRYVDALNSHNDFPDVQGVDDVQLLDQYYNQFNLDNSLHNQRNFEMPYLRHVTIPHQQSPTQKYSEMESPWSPAYYSPRHEFPNSPSSSRYHTPY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_028327`
TK1151 ID	TkA07G144210
OH-1004 ID	LXL04_028327
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	93.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_028327

Location Chr06:37866403-37869734 (-)

Description Similar to STY8: Serine/threonine-protein kinase STY8

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g79570`	RAF-like protein kinase acting, together with RAF24, as a central mediator of a fast response pathway to auxin involving proteins phosphorylation, and leading to rapid cellular responses including membrane depolarization and cytoplasmic streaming.	No verified direct reference in this release
`At2g35050`	RAF-like protein kinase acting, together with RAF20, as a central mediator of a fast response pathway to auxin involving proteins phosphorylation, and leading to rapid cellular responses including membrane depolarization and cytoplasmic streaming.	No verified direct reference in this release
`At1g73660`	Acts as a negative regulator of salt tolerance.	The genetic locus At1g73660 encodes a putative MAPKKK and negatively regulates salt tolerance in Arabidopsis.2008 · DOI: 10.1007/s11103-008-9306-8 SIS8, a putative mitogen-activated protein kinase kinase kinase, regulates sugar-resistant seedling development in Arabidopsis.2014 · DOI: 10.1111/tpj.12404
`At2g17700`	Serine/threonine protein kinase that specifically phosphorylates chloroplast precursor proteins in the cytosol within the cleavable presequences (transit peptides).	A protein kinase family in Arabidopsis phosphorylates chloroplast precursor proteins.2006 · DOI: 10.1074/jbc.m606580200 The cytosolic kinases STY8, STY17, and STY46 are involved in chloroplast differentiation in Arabidopsis.2011 · DOI: 10.1104/pp.111.182774

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_028327 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005985 sucrose metabolic process Biological Process

GO:0007165 signal transduction Biological Process

GO:0009637 response to blue light Biological Process

GO:0009646 response to absence of light Biological Process

GO:0009733 response to auxin Biological Process

GO:0009734 auxin-activated signaling pathway Biological Process

GO:0010109 regulation of photosynthesis Biological Process

GO:0010114 response to red light Biological Process

GO:0010928 regulation of auxin mediated signaling pathway Biological Process

GO:0071365 cellular response to auxin stimulus Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

KEGG gene cross-reference

ath:AT1G79570

ath:AT2G35050

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.513

Rank 1 · LXL04_028327 · OH-1004

Cell membrane0.364

Rank 2 · LXL04_028327 · OH-1004

Nucleus0.298

Rank 3 · LXL04_028327 · OH-1004

Golgi apparatus0.046

Rank 4 · LXL04_028327 · OH-1004

Endoplasmic reticulum0.041

Rank 5 · LXL04_028327 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00564.31PB161-146 aa

PF00069.32Pkinase601-861 aa

PF07714.24PK_Tyr_Ser-Thr602-863 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_028327	`PF00564.31`	PB1	61	146	3.2e-19	69.4
LXL04_028327	`PF00069.32`	Pkinase	601	861	2.1e-45	155.9
LXL04_028327	`PF07714.24`	PK_Tyr_Ser-Thr	602	863	8.3e-60	203.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SAJ2`	Arabidopsis thaliana	RAF-like serine/threonine-protein kinase 20	71.685%	Swiss-Prot	weak database homology
`O64768`	Arabidopsis thaliana	RAF-like serine/threonine-protein kinase 24	70.000%	Swiss-Prot	weak database homology
`Q9C9U5`	Arabidopsis thaliana	Probable serine/threonine-protein kinase SIS8	39.394%	Swiss-Prot	weak database homology
`O22558`	Arabidopsis thaliana	Serine/threonine-protein kinase STY8	31.169%	Swiss-Prot	moderate database homology

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